BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897260

Length=882
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44810.1 | Symbols:  | F-box family protein | chr3:16358496-...   237    1e-61


> AT3G44810.1 | Symbols:  | F-box family protein | chr3:16358496-16359983 
REVERSE LENGTH=1347
Length=1347

 Score =  237 bits (128),  Expect = 1e-61
 Identities = 148/158 (94%), Gaps = 0/158 (0%)
 Strand=Plus/Plus

Query  722   AGTGTCAAGGAAGTGACAACGAGCTGAAACACATTAGCCATTTCTTACTGAAAATGGAGT  781
             |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1166  AGTGTCAAGGAACTGAAAACGAGCTGAAACACATTAGCCATTTCTTACTGAAAATGGAGT  1225

Query  782   GTCTTCAACTGGTGCATGTTAACTTTTCAGAGACAATTGTTGACTCCAAAAAGGTGCAAC  841
             |||||||| ||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct  1226  GTCTTCAATTGGTGCAAGTCAATTTTTCAGAGACAATTGTTGACTCCAAAAAGGTGCAAC  1285

Query  842   TCACAGAGGATTTGTTTAAGCTTCCCTCAGCTTCATCC  879
             ||||||||||| || | ||||||||||| |||||||||
Sbjct  1286  TCACAGAGGATCTGATGAAGCTTCCCTCTGCTTCATCC  1323



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43050663979


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5