BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897261

Length=885
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44810.1 | Symbols:  | F-box family protein | chr3:16358496-...   488    3e-137
  AT3G44090.1 | Symbols:  | F-box family protein | chr3:15839123-...  67.6    2e-10 
  AT3G44096.1 | Symbols:  | transposable element gene | chr3:1585...  65.8    7e-10 


> AT3G44810.1 | Symbols:  | F-box family protein | chr3:16358496-16359983 
REVERSE LENGTH=1347
Length=1347

 Score =  488 bits (264),  Expect = 3e-137
 Identities = 359/403 (89%), Gaps = 14/403 (3%)
 Strand=Plus/Plus

Query  398  TTTGGTTTGAGAGAGA-AAATTTCTCTAATGTGCTTCTTGCTGGTTGCCCTGCACTTGAG  456
            |||||||||| ||| | ||| ||||||||||||||||||||||| |||||||||||||||
Sbjct  524  TTTGGTTTGATAGA-ATAAAGTTCTCTAATGTGCTTCTTGCTGGATGCCCTGCACTTGAG  582

Query  457  GACTTAACCATAGACCAAAAGTCTTTTCC-GGGATTGCCAAACGTTGTTTCCAGCAAAAC  515
            ||||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||||||
Sbjct  583  GACTTAACCATAGACCAAAAGTCTTTTCCAGGG-TTGCCGAACGTTGTTTCGAGCAAAAC  641

Query  516  CATTAAGAGACTCTCCATCGTCTATATACGTGC-GAATGA-TGCTGATTGGTTTCGCACG  573
            | ||||||| || ||||||||||||| |  | | |  ||| | | |||||||||||||| 
Sbjct  642  CGTTAAGAGTCTATCCATCGTCTATAAATATTCTG-CTGATTTC-GATTGGTTTCGCACT  699

Query  574  GTTGCGCTTGACACACCAAAGCTTCTCACCCTCTTCTACTCTACCTATGCTCGGCATAGG  633
            ||||| |||||||||||||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct  700  GTTGCACTTGACACACCAAACCTTGTCACCCTCCTCTACTCTACCTATGCTCGGCATAGG  759

Query  634  TATCGACATTGCAATTTAGACTCGCTTGTCAAAGCAACACTTGATCTTCATTTCTCAGAA  693
            |||||||||||||||||||| || |||||||| || ||||| ||||||||||||| ||||
Sbjct  760  TATCGACATTGCAATTTAGAGTCCCTTGTCAATGCTACACTGGATCTTCATTTCTTAGAA  819

Query  694  AATGAAATTTTTGATGAGGCTTTTGAACCGAATGTGACGGATCTCATGATTGCGGTGCGC  753
            |||    | |  |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  820  AAT----TGT--GATGAGGCTTTTGAACCGAATGTGACGGATCTCATGATTGCGGTACGC  873

Query  754  AATGTCAAGATGCTTCATTTGACTTTTTCTGCTACTGAGATGA  796
            |||||| |||||||||||||||||| ||||||||||||| |||
Sbjct  874  AATGTCCAGATGCTTCATTTGACTTCTTCTGCTACTGAGGTGA  916


 Score =  148 bits (80),  Expect = 7e-35
 Identities = 90/95 (95%), Gaps = 0/95 (0%)
 Strand=Plus/Plus

Query  791   AGATGAACATGAGTTTGATGAAATCCGCATTCCCCGGAGTAACAAAGTTAACATGTTGCG  850
             ||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct  1098  AGATGAAGATGAGTTTGATGAAATTCACATTCCCCGGAGTAACAAAGTTAACATGTTGCG  1157

Query  851   TATCATACAGTGTCAAGGAAGTGAAATCGAGCTGA  885
             |||||||||||||||||||| ||||| ||||||||
Sbjct  1158  TATCATACAGTGTCAAGGAACTGAAAACGAGCTGA  1192


> AT3G44090.1 | Symbols:  | F-box family protein | chr3:15839123-15840759 
FORWARD LENGTH=1350
Length=1350

 Score = 67.6 bits (36),  Expect = 2e-10
 Identities = 60/71 (85%), Gaps = 4/71 (6%)
 Strand=Plus/Plus

Query  400  TGGTTTGAGAGAGAA--AATTTCTCTAATGTGCTTCTTGCTGGTTGCCCTGCACTTGAGG  457
            ||||||||| || ||  || || ||| ||||| |||| || | |||||||||||||||||
Sbjct  562  TGGTTTGAG-GATAATCAA-TTATCTGATGTGTTTCTCGCAGCTTGCCCTGCACTTGAGG  619

Query  458  ACTTAACCATA  468
            |||||||||||
Sbjct  620  ACTTAACCATA  630


> AT3G44096.1 | Symbols:  | transposable element gene | chr3:15859368-15863166 
REVERSE LENGTH=3799
Length=3799

 Score = 65.8 bits (35),  Expect = 7e-10
 Identities = 205/282 (73%), Gaps = 31/282 (11%)
 Strand=Plus/Plus

Query  436  GCTGGTTGCCCTGCACTTGAGGACTTAACCATA-G--ACCAA-AAGTCTTTTCCGGGA-T  490
            |||| |||||||||||||||||||||||||||| |  || || || | |||   || | |
Sbjct  418  GCTGCTTGCCCTGCACTTGAGGACTTAACCATACGTTAC-AATAA-T-TTTAGAGGAAGT  474

Query  491  TGCCAAACGTTGTTTCCAGCAAAACCATTAAGAGACTCTCCA-TCGTCTATAT-ACGTGC  548
            | | | ||||| | |||||||||| |||||||| |||||| | |  || |||  | ||  
Sbjct  475  T-C-ATACGTTATATCCAGCAAAAGCATTAAGAAACTCTC-AGTTATCAATAGCA-GTA-  529

Query  549  GAATGATGCTGATTGGTT-TCGCA-CGGT-TG-CGCTTGACACACCAAA-GCTTCTC-AC  602
            |  || |  |||| |||  ||  | || | |  | ||||| ||||| || | || || ||
Sbjct  530  GT-TGTTA-TGAT-GGTCATCATAGCGTTATTACACTTGATACACCCAATG-TTGTCGAC  585

Query  603  CCTCTTCTACTCTACCTATGCT-CGGCATAG-GTATCGACATTGCAATTTAGACTCGCTT  660
              ||| |||||||   | | || | || ||  | ||| |||||| |||||||| || |||
Sbjct  586  T-TCTACTACTCTGGTTTT-CTTCAGCCTAAAG-ATCCACATTGTAATTTAGATTCACTT  642

Query  661  GTCAAAGCAACACTTGATCTTCATTTCTCAGAAAATGA-AAT  701
            | |||||| ||||| || |||||||||| |||| |||| |||
Sbjct  643  GCCAAAGCTACACTGGACCTTCATTTCTTAGAAGATGACAAT  684



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43201366420


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5