BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897270
Length=2106
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44910.1 | Symbols: ATCHX12, CHX12 | cation/H+ exchanger 12 ... 2942 0.0
> AT3G44910.1 | Symbols: ATCHX12, CHX12 | cation/H+ exchanger 12
| chr3:16392064-16394579 REVERSE LENGTH=2313
Length=2313
Score = 2942 bits (1593), Expect = 0.0
Identities = 1944/2115 (92%), Gaps = 18/2115 (1%)
Strand=Plus/Plus
Query 1 ATGTTGGCTGGTCTGATTCTGGGGCCTCAATTGTTCAATCTTAGGGAGGTATTATCGCGG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 208 ATGTTGGCTGGTCTGATTCTGGGGCCTCAATTGTTCAATCTTAGGGAGGTATCATCAAGG 267
Query 61 AAATTATCGTGGGATCCTGCACTGGATGGAAACGGGCCACTAAGAGGCCTCTCGGTGTGT 120
||||||||||||||||||||||| |||||||||||||| ||| ||||||| |||||||||
Sbjct 268 AAATTATCGTGGGATCCTGCACTAGATGGAAACGGGCCGCTACGAGGCCTTTCGGTGTGT 327
Query 121 GGAAACATTATGCTTGCATTTTTGATGACAGTCAAAATCAGCCGTCGATTAGCATTCAAC 180
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 328 GGAAACATTATGCTTGCATTTTTTATGACAGTCAAAATCAGCCGTCGATTGGCATTCAAC 387
Query 181 AACGGATGGCTACCAATCGTGATCGGGGTTTTGAGCTTCATCGTTCCTTTTTTGGGTGGC 240
|||||||||||||| |||||||| ||| |||||||||||| ||||||||||||||||||
Sbjct 388 AACGGATGGCTACCCATCGTGATAGGGACTTTGAGCTTCATTGTTCCTTTTTTGGGTGGC 447
Query 241 TTCTGTGTGCGAAACCTCCACACAGACAATATAGACCCTCAATACTTGTCGCCGAGTAAA 300
||||||||| ||||||||||||| || |||||||||||| | ||| ||||||||| ||||
Sbjct 448 TTCTGTGTGAGAAACCTCCACACTGATAATATAGACCCTTACTACATGTCGCCGAATAAA 507
Query 301 GTCCTTGCCGAGCGAACTGTGGTCATCTCAAGCCAATCCTCGATTCTCTTACCGACTGTC 360
|||||||||||||| | |||||||||||| |||||||||||||||||||| || || |||
Sbjct 508 GTCCTTGCCGAGCGCATTGTGGTCATCTCGAGCCAATCCTCGATTCTCTTGCCTACCGTC 567
Query 361 GTTCATTTCCTGTCGGAACTCAAGATCCTCAATTCCGAGCTTGGTCGCCTTGTGTTGTCT 420
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 568 GTTCATTTCCTGTCAGAACTCAAGATCCTCAATTCAGAGCTTGGTCGCCTTGTGTTGTCT 627
Query 421 GCATCCCTTATCAATGACATCTTCGCTTCTATTGTCAGCATAGTAGCCTATCTTGCGGGA 480
|||||||||||||||||||||||||| |||| ||||||||| | |||||||||| ||||
Sbjct 628 GCATCCCTTATCAATGACATCTTCGCGTCTACTGTCAGCATTTTCGCCTATCTTGTGGGA 687
Query 481 ACGTACAAGAATATCTCTCCAATGACAGCCTACCGTGATCTTATAGCGGTGATTATTTTG 540
||||||||||| |||||||| |||||||| || ||||| |||||||||||||| ||||||
Sbjct 688 ACGTACAAGAACATCTCTCCCATGACAGCATATCGTGACCTTATAGCGGTGATCATTTTG 747
Query 541 ATTCTCGTAGTCTTTTGCGTTTTAAGGCCGGTCGTAGAATGGATAGTAGAACGCACACCA 600
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 ATTCTAGTAGCCTTTTGCGTTTTAAGGCCGGTCGTAGAATGGATAGTAGAACGCACACCA 807
Query 601 GAAGGAAAACCTGTGGCAGATGTGTATGTACATGCTGCGGTTTTGAGCGTAATTGCTTCC 660
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 808 GAAGGCAAACCTGTGGCAGATGTGTATGTACATGCTGTGGTTTTGAGCGTAATTGCTTCC 867
Query 661 GCTGCATACACAACATTTTTCAATATGAAATACCTTTTGGGACCATTCTTACTCGGCCTC 720
|| |||||| | ||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 868 GCCGCATACTCTTCATTTTTTAATATGAAATACCTTTTGGGACCATTCTTACTCGGCATC 927
Query 721 ATCATACCCGAAGGTCCACCTATAGGATCCGCCTTGGAAGCCAAGTATGAGGCTCTCACA 780
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 928 ATCATACCAGAAGGTCCACCTATAGGATCTGCCTTGGAAGCCAAGTATGAGGCTCTCACA 987
Query 781 ATGAACGTGCTTACACCGATCTCAATTACATTCAGCACGATGAGATGCGACGTGATGAAG 840
||||||||||| | ||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 988 ATGAACGTGCTAATACCAATCTCAATCACATTCAGCACGATGAGATGCGATGTGATGAAG 1047
Query 841 ATCGTCTACCAATATGATGACATTGGGTACAACATCTTCTTAATGTTATTTACGGGCGTT 900
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||
Sbjct 1048 ATCGTCTACCAATATGATGACATTTGGTACAACATCTTCTTAATGACATTTACGGGCTTT 1107
Query 901 TTGAAAATGGTGACCGGGCTGGTACCTTGCTTGTACTGCAAGATACCACTCAAGGAGGCA 960
|||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1108 TTGAAAATGGCGACCGGGATGGTACCTTGCTTGTACTGCAAGATACCATTCAAGGAGGCA 1167
Query 961 ATAGCCGCTTCCCTACT-CTTATGCTCTAAGAGTTTCTCCGAGATATTTCTCTACGAATC 1019
|||||||||||||| || || |||||||||||||||||| || || ||||||||||||||
Sbjct 1168 ATAGCCGCTTCCCTTCTTCT-ATGCTCTAAGAGTTTCTCTGAAATCTTTCTCTACGAATC 1226
Query 1020 AACATTCGACGATTCGTATATATCGCAGGCAACATATACGTTCTTGATCGCTTGTGCGT- 1078
||||| ||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |
Sbjct 1227 AACATACGACGATTCGTATATATCGCAAGCAACATATACATTCTTGATCACTTGTGC-TC 1285
Query 1079 TAATAAACTCTGGAATTATCCCAACGGCCTTGGCCGGACTGTACGATCCGAAGCGGAAGT 1138
|||||||||||||||||||||| || |||||||||||||| || || |||||||||||||
Sbjct 1286 TAATAAACTCTGGAATTATCCCCACAGCCTTGGCCGGACTATATGACCCGAAGCGGAAGT 1345
Query 1139 ACGTTGGTTACCaaaaaaaGAACATCATGAATCTAAAACCAAATTCTGATCTCCGGATCT 1198
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1346 ACGTTGGTTACCAAAAAAAGAACATCATGAATCTAAAACCAGATTCAGATCTCCGGATCT 1405
Query 1199 TGACTTGTGTACACAAACCTGAGAACATCTCTGCGGCCATTTCATTTCTCCAATTATTAC 1258
|||||||| |||| | ||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1406 TGACTTGTATACATAGACCTGAGAACATCTCTGCGGCCATTTCATTTCTCCAATTTTTGC 1465
Query 1259 CCTCCACCATCGTGGTCACAGTCCTCCATCTCGTGAAGCTTGTTGGCAAAATCGTCCCCG 1318
|||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| ||||
Sbjct 1466 CCTCCACCATTGTGGTCACAGTCCTCCATCTCGTTAAGCTTGTTGGCAAAACCGTTCCCG 1525
Query 1319 TGGTAATCTCACACCACA-GTAAATCAAAACGTGTTGTGACTAACTCCTACATCCATACA 1377
| ||||||||||| ||| | |||| ||| ||||| || ||||||||||||||||||||
Sbjct 1526 TCCTAATCTCACACAACAAGCAAAT-AAATCGTGTAGTAACTAACTCCTACATCCATACC 1584
Query 1378 GCACA-CCTTGCATTCAGCCAGTTGGAGTCAGTGACCATGACCATGTTCACTGCTC-TCA 1435
|| || |||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1585 GC-CAACCTTGCCTTCAGCCAGTTGGAGTCAGTGACCATGACCATGTTCACTGC-CATCA 1642
Query 1436 CGCACGAGAACCTAATGCACGATGAAATCTGCAAGCTCGCGTTGGAACAAGTCGCATCGA 1495
||||||||||| |||||||||||||||| |||||| |||| |||||||||| | ||||||
Sbjct 1643 CGCACGAGAACTTAATGCACGATGAAATTTGCAAGGTCGCTTTGGAACAAGCCACATCGA 1702
Query 1496 TTATTATCGTCCCCTCGGGGAGGAAATGGACCATAGATGGGACGTTTGAGTCAGAGGACG 1555
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1703 TTATTATCGTCCCCTCGGGGAGGAAATGGACCGTAGATGGGGCGTTTGAGTCAGAGGACG 1762
Query 1556 AGGCTATTAGACGTCTCAATGAGTCACTACTCCAGAGTGCATCTTGTTCTATAGGGATTC 1615
| ||||| |||||||||||||||||||| ||| ||||||||||||||||||| |||||||
Sbjct 1763 AAGCTATAAGACGTCTCAATGAGTCACTCCTCAAGAGTGCATCTTGTTCTATTGGGATTC 1822
Query 1616 TCGTGGACCGTGGACAGTTCTCGCTGAGAGGAACAAGAAGATACGAGATCAATGTTGGTG 1675
| ||||||||||||||||| ||||||| ||||||||||| || | ||| | |||||||
Sbjct 1823 TTGTGGACCGTGGACAGTTGTCGCTGAAAGGAACAAGAAAATTTAATATCGACGTTGGTG 1882
Query 1676 TGATCTTCATTGGAGGCAAAGACGATCGTGAAGCACTCTCGTTGGT-AAAGAAGATGAAG 1734
|||||||||||||||||||||||||||| || |||||||||||||| ||| |||||||||
Sbjct 1883 TGATCTTCATTGGAGGCAAAGACGATCGGGAGGCACTCTCGTTGGTGAAA-AAGATGAAG 1941
Query 1735 CATAACCCTAGAGT-AAATATCACTGTGATTCGACTCATCTCT-AGCAGAGAAATAGAAT 1792
|| ||||||||||| ||| ||||||||||| |||||||||||| | | |||||| ||| |
Sbjct 1942 CAAAACCCTAGAGTCAAA-ATCACTGTGATCCGACTCATCTCTGACC-GAGAAACAGAGT 1999
Query 1793 CGACTAATTGGGATTACATTCTTGATCACGAGGTATTAGAGGATCTTAAAGATACCGATG 1852
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 2000 CGACTAATTGGGATTACATTCTTGATCACGAGGTTTTAGAGGATCTTAAAGATACAGAGG 2059
Query 1853 CCACAAATTGTATTGCATATACAGAGAGGATTGTGGCTGGAGGTCCTGAAGTAGCCACTA 1912
||||||| | ||||||||||||||||||||||||| |||||||||| ||||| |||||||
Sbjct 2060 CCACAAACTCTATTGCATATACAGAGAGGATTGTGACTGGAGGTCCAGAAGTGGCCACTA 2119
Query 1913 CCGTTCGATCTCTTTCTGAGGATTATGATCTTATGGTGGTTGGGAGAGATCATGGAATGG 1972
|||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 2120 CCGTCCGATCACTCTCTGAGGATTATGATCTTATGGTAGTTGGGAGAGATCATGGCATGG 2179
Query 1973 CATCACCAGACTTTGATGGACTCAAGGAGTGGATAGAACTACCCGAGCTAGGTGTTATCG 2032
||||||| ||||| |||||||||| ||||||| | |||||||||||| ||||||| || |
Sbjct 2180 CATCACCGGACTTCGATGGACTCATGGAGTGGGTCGAACTACCCGAGTTAGGTGTCATTG 2239
Query 2033 GAGATTTGCTAGC-TGCTAGAGATCTCGACTCTAGGGTTAATGTTTTGGTAGTCCAACAA 2091
||||||||||||| | ||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 2240 GAGATTTGCTAGCGT-CTAGAGAACTCGACTCTAGGGTTTCTGTTTTGGTAGTCCAACAA 2298
Query 2092 CAGCAACAAACGTGA 2106
|| ||||||||||||
Sbjct 2299 CAACAACAAACGTGA 2313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104417133600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5