BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897276
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44960.1 | Symbols: | unknown protein; Has 34 Blast hits to... 839 0.0
> AT3G44960.1 | Symbols: | unknown protein; Has 34 Blast hits
to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 3; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:16427795-16429151 FORWARD
LENGTH=624
Length=624
Score = 839 bits (454), Expect = 0.0
Identities = 568/623 (91%), Gaps = 8/623 (1%)
Strand=Plus/Plus
Query 1 ATGAGGCAGAGTCTCTCTGATATCACTAACTCTCAGTCTCAAGAAGAGTTTAATCTTTAC 60
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||
Sbjct 1 ATGAGGCAGAGTCTCTCTGATATTACTAACTCTCAGTCTCAAGAAGAGCTTAATCTTCAC 60
Query 61 GGGGTCGGTTCGGAGCCGAGTGAACACGTAAACCGGCTAATGAAGGTGAAAGCTTTGCAC 120
| ||||||| |||||||||| ||| ||||||||||| |||||||||||||| ||||||
Sbjct 61 AAGATCGGTTCCGAGCCGAGTGGACATGTAAACCGGCTGATGAAGGTGAAAGCGTTGCAC 120
Query 121 CATGAGGTTACTTGCAAAAATGCTTTGCTTAAGTCTAAATGTTTTGAAC-AAGAGAAAGG 179
||||||||||||||||||||||||||||| ||| ||||||||| || || ||||||||||
Sbjct 121 CATGAGGTTACTTGCAAAAATGCTTTGCTAAAGGCTAAATGTTGTG-ACAAAGAGAAAGG 179
Query 180 TGAAAAGACAAAACCAAGAAATGCCCTAACAACTGAGAATGTGCTAAAGATAAAGGACGA 239
|||||| || |||||||||||||| ||||||||||||| ||||||||| |||| ||||||
Sbjct 180 TGAAAACACTAAACCAAGAAATGCACTAACAACTGAGAGTGTGCTAAATATAACGGACGA 239
Query 240 AGACTCACCGTCACCGAAACCTTATGTACCAACCAGAAGGCGATTCATCAGAAGCAAATC 299
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 AGACTCACCGTCACCGAAACCTTTTGTACCAACCAGAAGGCGATTCATCAGAAGCAAATC 299
Query 300 CTTAGGAGCATCTACTGCAAACAAGAATGAGGCAGAAAAAGAGAAATCTGAAACCAAAAG 359
|||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||
Sbjct 300 CTTAGGAGCATCTACTACAAACAAGAATGAGGCAGAAAAAGTGAAATCGGAAACCAAAAG 359
Query 360 GAGGCATTTAAGAAGGAGATCAGC-GAGAGTGCGGTCAGCAGATCAAGAAGTTACAGAGA 418
|||||| |||||||||||||| || ||||||| | ||||||| |||||||| |||||||
Sbjct 360 GAGGCACTTAAGAAGGAGATC-GCCGAGAGTGAGATCAGCAGCGCAAGAAGTGACAGAGA 418
Query 419 ATCTGTTTGAGATCGAAGATCTCCAGCTTACAATGCCTAATAACATATGTCAACAAGATA 478
||||||||||||| ||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct 419 ATCTGTTTGAGATTGAAGATCTCCAGCTTACAATGCCTAATGACATGTCTCAACAAGATA 478
Query 479 ACTCGACAATGGCATCACATACCCGAAAGAAGGAAGCGGA-AAAGGAAGATTTACGAACA 537
||| |||||||| |||||||||||||||||| |||| || |||| ||| |||||| |||
Sbjct 479 ACTTGACAATGGAATCACATACCCGAAAGAAAGAAGAGGGGAAAG-AAGGTTTACGGACA 537
Query 538 AGACATC-TGGACTGTAAGGTCTATCGATCACCAGTCGATCAATCATTGCGTAGAGAAGC 596
||||||| || | | | || ||||||||||||||||||||| ||||||||||||||||||
Sbjct 538 AGACATCATG-ATTTTGAGATCTATCGATCACCAGTCGATCGATCATTGCGTAGAGAAGC 596
Query 597 TGAGAGGATACATTCTTACAAGG 619
|||||||||||| ||||||||||
Sbjct 597 TGAGAGGATACACTCTTACAAGG 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5