BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg897276 Length=639 Score E Sequences producing significant alignments: (Bits) Value AT3G44960.1 | Symbols: | unknown protein; Has 34 Blast hits to... 839 0.0 > AT3G44960.1 | Symbols: | unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:16427795-16429151 FORWARD LENGTH=624 Length=624 Score = 839 bits (454), Expect = 0.0 Identities = 568/623 (91%), Gaps = 8/623 (1%) Strand=Plus/Plus Query 1 ATGAGGCAGAGTCTCTCTGATATCACTAACTCTCAGTCTCAAGAAGAGTTTAATCTTTAC 60 ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| || Sbjct 1 ATGAGGCAGAGTCTCTCTGATATTACTAACTCTCAGTCTCAAGAAGAGCTTAATCTTCAC 60 Query 61 GGGGTCGGTTCGGAGCCGAGTGAACACGTAAACCGGCTAATGAAGGTGAAAGCTTTGCAC 120 | ||||||| |||||||||| ||| ||||||||||| |||||||||||||| |||||| Sbjct 61 AAGATCGGTTCCGAGCCGAGTGGACATGTAAACCGGCTGATGAAGGTGAAAGCGTTGCAC 120 Query 121 CATGAGGTTACTTGCAAAAATGCTTTGCTTAAGTCTAAATGTTTTGAAC-AAGAGAAAGG 179 ||||||||||||||||||||||||||||| ||| ||||||||| || || |||||||||| Sbjct 121 CATGAGGTTACTTGCAAAAATGCTTTGCTAAAGGCTAAATGTTGTG-ACAAAGAGAAAGG 179 Query 180 TGAAAAGACAAAACCAAGAAATGCCCTAACAACTGAGAATGTGCTAAAGATAAAGGACGA 239 |||||| || |||||||||||||| ||||||||||||| ||||||||| |||| |||||| Sbjct 180 TGAAAACACTAAACCAAGAAATGCACTAACAACTGAGAGTGTGCTAAATATAACGGACGA 239 Query 240 AGACTCACCGTCACCGAAACCTTATGTACCAACCAGAAGGCGATTCATCAGAAGCAAATC 299 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 240 AGACTCACCGTCACCGAAACCTTTTGTACCAACCAGAAGGCGATTCATCAGAAGCAAATC 299 Query 300 CTTAGGAGCATCTACTGCAAACAAGAATGAGGCAGAAAAAGAGAAATCTGAAACCAAAAG 359 |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||| Sbjct 300 CTTAGGAGCATCTACTACAAACAAGAATGAGGCAGAAAAAGTGAAATCGGAAACCAAAAG 359 Query 360 GAGGCATTTAAGAAGGAGATCAGC-GAGAGTGCGGTCAGCAGATCAAGAAGTTACAGAGA 418 |||||| |||||||||||||| || ||||||| | ||||||| |||||||| ||||||| Sbjct 360 GAGGCACTTAAGAAGGAGATC-GCCGAGAGTGAGATCAGCAGCGCAAGAAGTGACAGAGA 418 Query 419 ATCTGTTTGAGATCGAAGATCTCCAGCTTACAATGCCTAATAACATATGTCAACAAGATA 478 ||||||||||||| ||||||||||||||||||||||||||| |||| | ||||||||||| Sbjct 419 ATCTGTTTGAGATTGAAGATCTCCAGCTTACAATGCCTAATGACATGTCTCAACAAGATA 478 Query 479 ACTCGACAATGGCATCACATACCCGAAAGAAGGAAGCGGA-AAAGGAAGATTTACGAACA 537 ||| |||||||| |||||||||||||||||| |||| || |||| ||| |||||| ||| Sbjct 479 ACTTGACAATGGAATCACATACCCGAAAGAAAGAAGAGGGGAAAG-AAGGTTTACGGACA 537 Query 538 AGACATC-TGGACTGTAAGGTCTATCGATCACCAGTCGATCAATCATTGCGTAGAGAAGC 596 ||||||| || | | | || ||||||||||||||||||||| |||||||||||||||||| Sbjct 538 AGACATCATG-ATTTTGAGATCTATCGATCACCAGTCGATCGATCATTGCGTAGAGAAGC 596 Query 597 TGAGAGGATACATTCTTACAAGG 619 |||||||||||| |||||||||| Sbjct 597 TGAGAGGATACACTCTTACAAGG 619 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30843766258 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5