BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897280
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45000.1 | Symbols: VPS24.2, VPS24 | SNF7 family protein | c... 802 0.0
> AT3G45000.1 | Symbols: VPS24.2, VPS24 | SNF7 family protein |
chr3:16460348-16461407 FORWARD LENGTH=603
Length=603
Score = 802 bits (434), Expect = 0.0
Identities = 531/579 (92%), Gaps = 1/579 (0%)
Strand=Plus/Plus
Query 107 TTCGAGATATTGAGAGAGAAGAAAGAAATGTACATAAAGCTATCAAAGACTCGGTGAAGC 166
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 21 TTC-AGATATTGAGAGAGAAGAAAGAAATGTGCATAAAGCTATCAAAGACTCGGTAAAGC 79
Query 167 GGTATGATATGGTCACTGCTAAGGCACTAGCTAGAGAAATAGTGAGATCGAGAAGAACGG 226
|| ||||| ||||||||||||||||||| ||||| ||||||||||| || ||||||||||
Sbjct 80 GGAATGATTTGGTCACTGCTAAGGCACTTGCTAGGGAAATAGTGAGTTCTAGAAGAACGG 139
Query 227 TTAAGCGGTTATACGAGAATAAAGCGAAGATGAATTCAATATCAATGCATCTTGGAGAGA 286
|||||||| ||||||||||||||||| || ||||||| || |||||||||||||| ||||
Sbjct 140 TTAAGCGGCTATACGAGAATAAAGCGCAGGTGAATTCTATTTCAATGCATCTTGGGGAGA 199
Query 287 GTATTGCGATTTCGGGAACAGTTGGGCTTCTTTCGAAGAGCGGTGAGGTTATGAAGCTTG 346
||||||| | | ||| ||| |||||| |||||||||||| |||||||||||||||||||
Sbjct 200 GTATTGCTACTGCGGTAACTGTTGGGAATCTTTCGAAGAGTGGTGAGGTTATGAAGCTTG 259
Query 347 TTAATAGTCTAATGAAAGCTCCAGATATGGCTGTGACAATGCAGGCATTTAGCAAAGAGA 406
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 260 TTAATAGTCTAATGAAAGCTCCAGAGATTGCTGTGACAATGCAGGCATTTAGCAAAGAGA 319
Query 407 TGACCAAGGCTGGGGTTATTGAAGAGTTTGTAAGTGATGCGGTTGATAATGCCTTAGATT 466
|||||||| |||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 320 TGACCAAGACTGGGGTTATTGAAGAGTTTGTGAGTGATGCTGTGGATAATGCCTTAGATT 379
Query 467 CTGAGGATATCGAAGAGGAGATCGAGGAAGAGGTTGATAGGGTATTGACTGCCATAGCAG 526
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 380 CTGAGGATATTGAAGAGGAGATCGAGGAAGAGGTTGATAAGGTATTGACTGCCATAGCAG 439
Query 527 GAGAGACTGCAGCTGAGCTCCCAGAAGCAGTTAGGAAGGAAAAGATAAATGTACTAGCGC 586
|||||||||||||||||||||| ||||||||||||||| ||||||| ||||| | ||| |
Sbjct 440 GAGAGACTGCAGCTGAGCTCCCGGAAGCAGTTAGGAAGCAAAAGATGAATGTTCCAGCTC 499
Query 587 AAAAGGCGGGAACTTCACACGGGGAAGATGCAATTGCACAAGGAGTTGATAATGAAGACG 646
||||||||| ||||| |||||||||||||||||||| | ||||||||||| |||||| |
Sbjct 500 AAAAGGCGGAAACTTTACACGGGGAAGATGCAATTGTAGAAGGAGTTGATGCTGAAGAAG 559
Query 647 AACTAGAGGACATTAGAGCTCGGCTCGCCAATGTTAGAT 685
||||||||| ||||||| |||||| |||||||||||||
Sbjct 560 AACTAGAGGCCATTAGATATCGGCTAGCCAATGTTAGAT 598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5