BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897300
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21700.1 | Symbols: | Protein of unknown function (DUF2921)... 1615 0.0
> AT4G21700.1 | Symbols: | Protein of unknown function (DUF2921)
| chr4:11529956-11532844 FORWARD LENGTH=2889
Length=2889
Score = 1615 bits (874), Expect = 0.0
Identities = 1078/1172 (92%), Gaps = 31/1172 (3%)
Strand=Plus/Plus
Query 1 ATGGCGACTTTTTGGCCA-CCTTCTTCATCTTCAAACTACCCTTCAATATTCCTTTATTT 59
|||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGGCGACTTTTTGGCCATCC-TCTTCATCTTCAAACCACCCTTCAATATTCCTTTATTT 59
Query 60 ACAATCATACCCTTTTCTCTTCTTCCTCCTCTTTCTGACCACCTCTGCAACTTCACTCAC 119
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 60 ACAATCATACCCTTCTCTCTTCTTCCTCCTCTTTCTTACCACCTCTGCAACTTCACTCAC 119
Query 120 CCTTGCATCCTTAGTGAATCCTCACTCTTACATATCCCCACGAGTCCCTTATTCCGATCA 179
| ||||||||||||||||||||||||||| |||| | |||||| ||||||||||||||||
Sbjct 120 CGTTGCATCCTTAGTGAATCCTCACTCTTTCATAGCTCCACGAATCCCTTATTCCGATCA 179
Query 180 CTGCAACCACATAGTTCCAGAGTCTCCGATCGACCCATCTCCCTCCGCCGTATTCAGCCG 239
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 CTGCAACCACATAGTTCCAGAGTCTCCGATCGACCCATCTCCCTCCGCTGTATTCAGCCA 239
Query 240 TGCGTCGCTTGCTTTCGATTTCAGCTTCTTCTCCGGCGGCGACTCT-TTCTTCAATCGGT 298
|| ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct 240 CGCATCGCTTGCTTTCGATGTCAGCTTCTTCTCCGGCGGCGACT-TGTTCTTCAATCGGT 298
Query 299 ATCAATCACAGAATGGTGATGTTAAATCAGCTAGATTCAGACCCATGTCAATCCGCAAAA 358
|||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||
Sbjct 299 TTCAATCACAGAATGGTGATGTTAAATCAGCTAGATTTAGACCCAAATCAATCCGTAAAA 358
Query 359 CGTTGGGTGATGGGAAGATTTACAAGGTTGAAGAC-AAATTGACTTTACAAATCTCAAAA 417
| ||||| |||||||||||||||||||| |||| | |||||||||||||||||||| |||
Sbjct 359 CTTTGGGAGATGGGAAGATTTACAAGGTGGAAG-CGAAATTGACTTTACAAATCTCCAAA 417
Query 418 ACCTCAGCTTTTTCTTCTTATTACGGCGGCGATTTTGGCAAGAAAAAGCTTCAGGTAACG 477
||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 418 ACCTCTGCTTCTTCTTCTTATTACGGCGGCGATTTTGGCCAGAAAAAGCTTCAGGTAATG 477
Query 478 CATATCGACGGACGTAGCTCTTGGGGAGGAGCAAGTTTCGATTTTT-CTGGGTTTTGGTC 536
|| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 478 CAGATCGACGGACGTAGCTCTTGGGGAGGAGCAAGTTTCGATTTTTAC-GGGTTTTGGTC 536
Query 537 GGAATCTACAGGACAAGTTTGTATGGTTGGATCAACTCAAGTTTTATCTGTGGAAGGTAC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GGAATCTACAGGACAAGTTTGTATGGTTGGATCAACTCAAGTTTTATCTGTGGAAGGTAC 596
Query 597 T-GATTTGAAG-TCCTTTGATGCTCGTCTTATGCTTAATTATTCCAATGAGTCTAATATC 654
| | ||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 597 TCG-TTTGAAGATC-TTTGATGCTCGTCTTATGCTTAACTATTCCAAGGAGTCTAATATC 654
Query 655 TATGGAAGTTTGGTTAAGGGAGTGTTAGAGAGCGTGAATAGCC-AGAGTGAGTTTAAAAC 713
|||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||
Sbjct 655 TATGGAAGTTTGGTTAAGGGAGTGTTAGAGAGCGTGGATAGCCTA-AGTGAATTTAAAAC 713
Query 714 GATCTCGATTCTTGGTGCAAGAAACACTCCTTTGAACTATGAGTACAAGTTTTTGGAGCA 773
| | | ||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 714 GGTTTTGATTCTTGGTGCAAGAAACACTCCTTTGAACTATGAGTATAAGTTGTTAGAGCA 773
Query 774 ATCGAAATCAGATTGCGAGGTAAACAGTGGAGAGAGTTTGTCGTTAGAGAATGTTTTTGG 833
|||||| | ||||| | |||||| ||||||||||||||||||||||||||||||| ||
Sbjct 774 ATCGAAGTTGGATTGTGGGGTAAATGGTGGAGAGAGTTTGTCGTTAGAGAATGTTTTGGG 833
Query 834 AGGAATGTGTAAGGTTTTTGAAGGTA-ATAGTCATGTGTTTGGTTTGATGTATAGAACTG 892
|||||||||||| || |||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 834 AGGAATGTGTAAAGTATTTGAAGGTAGA-AGTCATGTGTTTGGTTTGATGTATAGAAATG 892
Query 893 GTTGTGGGATTAACCATAGTTATAGTCCTTTTGGAAGTGATGTAGAGTACACACCAGGTT 952
||||||| || ||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 893 ATTGTGGGGTTGACCATAGTTGTAGTCCTTTTGGAAGTGATGTAGAGTACACACCGGGTT 952
Query 953 TTATGTCGATGTTATCGTTTCTTTGTGACGGGGA-----T-----T--T---GTCATTTA 997
|||||||||||||||||||||| ||||| ||||| | | | ||||||||
Sbjct 953 TTATGTCGATGTTATCGTTTCTGTGTGATGGGGAGAAGATGCGAATGCTTTTGTCATTTA 1012
Query 998 GTAACATAAGTAGTTATAGCAGGTTGTTTCCATTTGATCCGAGAACCAGTTTGGTTGCAG 1057
||||||| || ||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1013 GTAACATGAGCGGTTATAGTAGTTTGTTTCCATTTGATCCGAGAACCAGTTTGGTTGCAG 1072
Query 1058 AGGGAACTTGGGATGTGGAGAGGAATAGGTTCTGTGGTGTTGCGTGCAGGATCTTGAATT 1117
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 AGGGAAGTTGGGATGTAGAGAGGAATAGGTTCTGTGGTGTTGCGTGCAGGATCTTGAATT 1132
Query 1118 TCTCGGATTCTTTGAGTAATGCTGTGTTTGAT 1149
|||||||||||||||||||||||||| |||||
Sbjct 1133 TCTCGGATTCTTTGAGTAATGCTGTGGTTGAT 1164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70682367360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5