BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897304
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45170.1 | Symbols: GATA14 | GATA transcription factor 14 | ... 525 2e-148
> AT3G45170.1 | Symbols: GATA14 | GATA transcription factor 14
| chr3:16537538-16538305 FORWARD LENGTH=688
Length=688
Score = 525 bits (284), Expect = 2e-148
Identities = 481/569 (85%), Gaps = 41/569 (7%)
Strand=Plus/Plus
Query 33 AGAAGAAGATTTTGGAACTGCCATGCAGCAACTTCCTATACCTGTCAACGAACTCGATAA 92
|||||||||| ||||||||||||||||| || |||| || |||||||||| | |||||||
Sbjct 21 AGAAGAAGATCTTGGAACTGCCATGCAGAAAATTCCCATCCCTGTCAACGTATTCGATAA 80
Query 93 ATTACCCATGGATTTGGACT-CGGTTTAT-GGTTTTGCGGATGAATTAAGAGAGATCATA 150
| ||||||||||||||| | |||||| | |||||||| |||| | ||||||||||||||
Sbjct 81 AGAACCCATGGATTTGGA-TACGGTTT-TCGGTTTTGCTGATGGAGTAAGAGAGATCATA 138
Query 151 GAAGATTCCAATTTACTAATTGAGGATTCTCGAAAGTTTGATGATCTTAACCACAACAAA 210
|||||||||||||||||| ||||||| |||||| || || ||| | || ||
Sbjct 139 GAAGATTCCAATTTACTACTTGAGGAATCTCGAGAG-TT--TGA---T-------AC-AA 184
Query 211 TTTATCGATGTTTCAAAACCGTCTAGAAACTCCTCAGCTCAGCCAACCGCGACAAGAGGT 270
| ||| ||| ||||||||| |||||| |||| || |||||||||||||||||||
Sbjct 185 ---A-CGA---TTCCAAACCGTCTCGAAACTTCTCAAATCTGCCAACCGCGACAAGAGGT 237
Query 271 CGTTTTCATGCACCAACACGATCTAGAAACAAGCGAGGAAGaaaaaaaaGACTAAAC-TT 329
||| |||||||||||| ||||||| ||||||||||||||||| |||||||||| | ||
Sbjct 238 CGTCTTCATGCACCAAAACGATCTGGAAACAAGCGAGGAAGACAAAAAAGACT-GTCTTT 296
Query 330 CACTAGTCCAGCAGATC--------TC----TTTGGCATTACAAACAAGAGTTGTTCACA 377
|| |||||| |||||| || ||||||||||| ||||||||||||||||
Sbjct 297 CAAGAGTCCATCAGATCTTTTTGATTCTAAATTTGGCATTACCGACAAGAGTTGTTCACA 356
Query 378 TTGCGGGACGAGAAAGACTCC-CTTATGGAGGGAAGGACCGAGAGGAGCGGGTACGCTAT 436
||||||||||||||||||||| || |||||| |||||||||||||||||||| |||||||
Sbjct 357 TTGCGGGACGAGAAAGACTCCGCT-ATGGAGAGAAGGACCGAGAGGAGCGGGAACGCTAT 415
Query 437 GTAACGCATGCGGAATGCGATACAGAACAGGTCGGCTACTACCCGAGTACCGTCCTGCTT 496
||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 416 GTAACGCGTGCGGGATGCGATACAGGACAGGTCGGCTACTTCCCGAGTACCGCCCTGCTT 475
Query 497 CAAGTCCCGATTTCATACCAAACGTTCACTCGAATTTTCATCGGAAGGTTATGGAAATCA 556
||||||| ||||||| ||| ||||||||||| || |||||||| ||||||||||||||||
Sbjct 476 CAAGTCCGGATTTCAAACCTAACGTTCACTCCAACTTTCATCGAAAGGTTATGGAAATCA 535
Query 557 GAAGGGAGAGGAAGTCACCTCCTCCCAAT 585
||||||||||||||||| ||||||| |||
Sbjct 536 GAAGGGAGAGGAAGTCATCTCCTCCGAAT 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29638146730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5