BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897308

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G58670.1 | Symbols: ATPLC1, ATPLC, PLC1 | phospholipase C1 |...   438    2e-122


> AT5G58670.1 | Symbols: ATPLC1, ATPLC, PLC1 | phospholipase C1 
| chr5:23704231-23706800 REVERSE LENGTH=1961
Length=1961

 Score =  438 bits (237),  Expect = 2e-122
 Identities = 291/318 (92%), Gaps = 0/318 (0%)
 Strand=Plus/Plus

Query  94    GATGCAGAAGAACTGGTTCAAGAAAAAGATGTGGAGAGTGCAGCGATCGAATACAGAGAC  153
             |||||||||||||  ||||||||| |||||| |||||||| |||||| ||||||||||||
Sbjct  875   GATGCAGAAGAACAAGTTCAAGAAGAAGATGAGGAGAGTGTAGCGATTGAATACAGAGAC  934

Query  154   TTAATCTCGATTCACGCTGGGAACCACAAAGGAGGATTGAAGAACTGCTTAAATGGAGAT  213
             ||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||
Sbjct  935   TTAATCTCGATTCACGCTGGGAACCGCAAAGGAGGGTTGAAGAATTGCTTGAATGGAGAT  994

Query  214   CCTAACCGAGACATACGGTTAAGCATCAGTGAGCAGTGGCTTGAGACTTTGGCTAAAACT  273
             |||||||||| ||||||||||||||| ||||||||||||||||||||| |||| ||||| 
Sbjct  995   CCTAACCGAGTCATACGGTTAAGCATGAGTGAGCAGTGGCTTGAGACTCTGGCAAAAACC  1054

Query  274   CGTGGACCTGATTTAGTAAAGTTCACGCAGTGGAATCTTTTGAGGATATATCCCAAGACA  333
             |||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| 
Sbjct  1055  CGTGGACCCGATTTAGTAAAGTTCACGCAGCGGAATCTTTTGAGGATATTTCCCAAGACT  1114

Query  334   ACACGGTTCGACTCGTATAACTATGATCCTCTCGTTGGATCGATTCATGGTGCTCAAACG  393
             |||||||| ||||| | ||||||||||||||||||||| | ||||||||| ||||||| |
Sbjct  1115  ACACGGTTTGACTCATCTAACTATGATCCTCTCGTTGGGTGGATTCATGGGGCTCAAATG  1174

Query  394   GTTGTCTTCAATATGCAA  411
             |||| |||||||||||||
Sbjct  1175  GTTGCCTTCAATATGCAA  1192


 Score = 93.5 bits (50),  Expect = 2e-18
 Identities = 56/59 (95%), Gaps = 0/59 (0%)
 Strand=Plus/Plus

Query  13   AAGATTACGATCTTAATCTCAACAAAGCCACCAAAAGAGTATCTTCAGACCCAAATCTC  71
            |||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  770  AAGAATAAGATCTTGATCTCAACAAAGCCACCAAAAGAGTATCTTCAGACCCAAATCTC  828



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24664966177


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5