BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897321
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45280.1 | Symbols: SYP72, ATSYP72 | syntaxin of plants 72 |... 1258 0.0
> AT3G45280.1 | Symbols: SYP72, ATSYP72 | syntaxin of plants 72
| chr3:16611413-16613340 REVERSE LENGTH=872
Length=872
Score = 1258 bits (681), Expect = 0.0
Identities = 764/805 (95%), Gaps = 2/805 (0%)
Strand=Plus/Plus
Query 1 ATGCCGGTCATTGATATTATCTTCAGAGTCGAAGAGATTTGCAAAAAGTATGACAAGTAC 60
||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 37 ATGCCGGTCATTGATATCATCTTCAGAGTCGACGAGATTTGCAAAAAGTACGACAAGTAC 96
Query 61 GACGTCGACAAACACCGTGAGATAGGTGCTTCCGGCGACGATGCCTTCTCTCGCCTCTTC 120
||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 97 GACATCGACAAACACCGTGAGATCGGCGCTTCCGGCGACGATGCCTTCTCTCGCCTCTTC 156
Query 121 ACCTCCATTGATTCCGACATTGAAGCTGTTCTTCGTAAAGCCGAGTTGGCGTCGACGGAG 180
|||||||||||||||||||| ||||| |||||||||||||| |||||||| || ||||||
Sbjct 157 ACCTCCATTGATTCCGACATCGAAGCAGTTCTTCGTAAAGCGGAGTTGGCATCAACGGAG 216
Query 181 AAGAATAGAGCTGCCGCGGTGGCTATGAATGCTGAGGTTCGAAGGACAAAAGCGCGTTTA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 217 AAGAATAGAGCTGCCGCGGTGGCTATGAATGCTGAGGTTCGAAGGACAAAAGCGCGATTA 276
Query 241 GCTGAAGATGTTGTTAAGCTTCAGAAACTTGCTGTTAAAAAGATTAAAGGGCTTACAAGA 300
||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||
Sbjct 277 GCTGAAGATGTTGTTAAGCTTCAGAAACTCGCTGTTAAGAAGATTAAAGGGCTCACGAGA 336
Query 301 GAGGAACGAGAATCTCGCTGTGATTTAGTTATCGCGTTAGCCGATAGGCTTCAAGCAG-T 359
||||||||||||||||| || ||| |||||||||| |||||||||||||||||||| | |
Sbjct 337 GAGGAACGAGAATCTCGGTGCGATCTAGTTATCGCTTTAGCCGATAGGCTTCAAGC-GAT 395
Query 360 ACCTGATGGAAATGAACATGGAGCAAAACAAGCTAATAATGATTGGGGAGGTGCTTCTGC 419
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 396 ACCTGATGGAAATGAACATGGAGCAAAACAAGCAAATAGTGATTGGGGAGGTGCTTCTGC 455
Query 420 ACCTAACAAGAACATCAAGTTTGATATGTCTGAGGAAGACATGCATGATGGATTTTTCCA 479
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 456 ACCTAACAAGAACATCAAGTTTGATATGTCTGAGGAAGACATGGATGATGGATTTTTCCA 515
Query 480 GCAAACTGAAGAATCTAGCCAGTTTCGACAAGAATATGAGATGAGAAAAAAGAAACAAGA 539
||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 516 GCAAAGTGAAGAATCCAGCCAGTTTCGACAAGAATATGAGATGAGAAGAAAGAAACAGGA 575
Query 540 CGAGGGTCTTGATGTCATATCTGAAGGTTTGGATGCACTAAAGAACTTAGCGCGTGACAT 599
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 576 TGAGGGTCTTGATATCATATCAGAAGGTTTGGATGCACTAAAGAACTTAGCGCGTGACAT 635
Query 600 GAACGAGGAACTTGACAAGCAAGTCCCATTGATGGAAGAAATGGAAACAAAGGTCGATGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 GAACGAGGAACTTGACAAGCAAGTCCCATTGATGGAAGAAATGGAAACAAAGGTCGATGG 695
Query 660 AGCAACTTCGGATTTGAAGAACACCAATGTTCGGCTCAAGAAACAGCTTGTGCAGATGAG 719
||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
Sbjct 696 AGCCACTTCGGATTTGAAGAATACCAACGTTCGGCTCAAGAAACAGCTTGTGCAGATGCG 755
Query 720 ATCTAGCCGCAACTTCTGCATCGACATTGTTCTTCTATGTGTGATCCTTGGAATCGTCTC 779
||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct 756 ATCCAGCCGAAACTTCTGCATCGACATTATTCTTCTCTGTGTGATCCTTGGAATTGTCTC 815
Query 780 TTACATTTACAATGCTCTAAACTAA 804
|||||||||||||||||||||||||
Sbjct 816 TTACATTTACAATGCTCTAAACTAA 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39132400513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5