BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897322
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45290.1 | Symbols: MLO3, ATMLO3 | Seven transmembrane MLO f... 2222 0.0
AT3G45300.1 | Symbols: IVD, ATIVD, IVDH | isovaleryl-CoA-dehydr... 331 1e-89
> AT3G45290.1 | Symbols: MLO3, ATMLO3 | Seven transmembrane MLO
family protein | chr3:16617544-16621370 FORWARD LENGTH=1587
Length=1587
Score = 2222 bits (1203), Expect = 0.0
Identities = 1427/1533 (93%), Gaps = 24/1533 (2%)
Strand=Plus/Plus
Query 1 ATGACGGAAAAAGAAGAAAGCAACGACTCCAT-GGAGGTTGGCGCCGTCCGATCCCTCCA 59
|||||||| ||||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 43 ATGACGGATAAAGAAGAAAGCAACCACTCC-TCGGAGGTTGGCGCCGTCCGATCCCTCCA 101
Query 60 AGAAACTCCCACTTGGGCTCTGGCCACCGTTTGTTTCTTCTTCATCGCCGTTTCCA-TTG 118
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 102 AGAAACTCCCACTTGGGCTCTGGCCACCGTTTGTTTCTTCTTCATCGCTGTTTCCATTTG 161
Query 119 TTCTCGAGCGTCTCATCAATCTTCTCTCCACTAGACTTAAGAAAAATAGaaaaaaaTCGC 178
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 162 -CCTCGAGCGTCTCATCAATCTTCTATCCACTAGACTTAAGAAAAATAGAAAAACGTCGC 220
Query 179 TACTTGAAGCTGTAGAGAACCTCAAATCAGTTTTAATGGTGCTAGGATTCATGTCACTGA 238
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
Sbjct 221 TACTTGAAGCTGTAGAGAAGCTCAAATCAGTTCTAATGGTGCTAGGATTCATGTCACTAA 280
Query 239 TGCTAAATGTGACTGAAGGAGAAGTTTCGAAGATATGCATTCCCATAAAGTATGCCAATC 298
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 281 TGCTAAATGTAACTGAAGGAGAAGTTTCGAAGATATGCATTCCTATAAAGTATGCCAATC 340
Query 299 GAATGTTGCCTTGTCGTAAAACCATAAAATCACATGATGATGTTAGT--A-A--A-GATG 352
|||||||||| || ||||||||||||||||||||| ||||||||||| | | | ||||
Sbjct 341 GAATGTTGCCATGCCGTAAAACCATAAAATCACATAATGATGTTAGTGAAGATGATGATG 400
Query 353 ATGATGA---TG---ATCGTGACAACAGCTTCTTTCATCAGTGCTCTTCCAAGGGGAAGA 406
||||||| || ||| ||||||||||||||||||||| |||||||||||||| ||||
Sbjct 401 ATGATGATGGTGATAATCATGACAACAGCTTCTTTCATCAATGCTCTTCCAAGGGTAAGA 460
Query 407 CGTCACTAATATCACAAGAAGGGTTGACTCAGTTGAGTTTCTTCTTCTGTGTGTTGGCAT 466
| |||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 461 CTTCACTAATATCAGAAGAAGGGTTGACTCAGTTGAGTTACTTCTTCTTTGTGTTGGCAT 520
Query 467 GTATGCATATTCTCTGCAATCTTGCCATTCTTCTTCTTGGAATGGCCAAGATGAGAAAAT 526
| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 521 GCATGCATATTCTCTGCAATCTTGCTATTCTTCTCCTTGGAATGGCCAAGATGAGAAAAT 580
Query 527 GGAAATCGTGGGAGAAAGAGACCCAAACAGTGGAGTATCTAGCAGCAAACGATCCGAATA 586
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 GGAATTCGTGGGAGAAAGAGACCCAAACAGTGGAGTATCTAGCAGCAAACGATCCGAATA 640
Query 587 GGTTTAGAATAACAAGAGATACCACATTTGCCCGACGACACTTAAGTTCTTGGACTGAAA 646
|||||||||||||||||||||| |||||||| ||||||||| | ||||| ||||||||||
Sbjct 641 GGTTTAGAATAACAAGAGATACAACATTTGCTCGACGACACCTGAGTTCATGGACTGAAA 700
Query 647 CATCGA-TTCAACTTTGGATTAAATGTTTCTTCAGACAATTTTTCAACTCGGTGGCGAAA 705
|||| | |||||||||||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 701 CATC-ATTTCAACTTTGGATTAAATGTTTCTTCAGGCAATTTTACAACTCAGTGGCGAAA 759
Query 706 GTCGATTACCTCACACTTCGTCATGGGTTCATCTTTGCTCATGTACCGTCAAATAATGCT 765
|| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 760 GTAGATTACCTCACACTTCGGCATGGGTTCATCTTTGCTCATGTATCGTCAAATAATGCT 819
Query 766 TTCAACTTCCAAAATTATATACAAAGATCTTTACATGAAGATTTTAAAACCGTGGTTGGT 825
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 820 TTCAACTTCCAAAACTATATACAGAGATCTTTACATGAAGATTTTAAAACTGTGGTTGGT 879
Query 826 ATAAGTCCTTTAATTTGGCTAACCGTGGTCATCTTTATGCTCCTCGACGTTTATGGTTGG 885
|||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 880 ATAAGTCCTTTAATGTGGCTAACTGTGGTCATCTTTATGCTCCTCGACGTTTCTGGTTGG 939
Query 886 AGAGTATACTTTTATATGTCATTTGTGCCACTAATTATAGTGCTAGTGATCGGGACGAAA 945
|||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 940 AGAGTATATTTTTATATGTCATTTGTGCCACTCATTATAGTTTTAGTGATCGGGACGAAA 999
Query 946 CTAGAGATGATAGTAGCGAAAATGGCTGTCACAATTAAGGAGAATAACAGTGTAATTAGA 1005
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1000 CTAGAGATGATAGTAGCGAAAATGGCGGTCACAATTAAGGAGAATAACAGTGTAATTAGA 1059
Query 1006 GGAACCCCTCTTGTTGAGCCAAACGACACGCATTTCTGGTTTTCCAATCCTCGTATCCTC 1065
||||||||||| |||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 1060 GGAACCCCTCTCGTTGAGTCAAACGACACGCATTTCTGGTTTTCCAATCCTCGTTTTCTC 1119
Query 1066 ATAAGTATTCTACACTACACGCTGTTTCTGAACACCTTCGAGATGGCATTTTTTCTGTGG 1125
|||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1120 TTAAGCATTCTACACTACACGCTGTTTCTGAACACCTTCGAGATGGCATTTATTGTGTGG 1179
Query 1126 GTCACTTGGCAACTTGGGATTAACTCTTGCTACCATGATAACCGAGGGATCATCATCACA 1185
||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1180 ATCACTTGGCAATTTGGGATTAACTCTTGCTACCATGATAACCAAGGGATCATAATCACA 1239
Query 1186 CGACTTGTATTAGCGGTGACAGTCCAGTTCTTGAGCAGCTACATAACACTGCCTCTTTAT 1245
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1240 CGACTTGTATTAGCGGTGACAGTCCAGTTCTTGAGCAGCTACATTACATTGCCTCTTTAT 1299
Query 1246 GCCATTGTAACTCAGATGGGGTCAAGCTACAAGAGAGCAATCTTAGAAGAACAACTAGCA 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 GCCATTGTAACTCAGATGGGGTCAAGCTACAAGAGAGCAATCTTAGAAGAACAACTAGCA 1359
Query 1306 AATGTGTTAAGGCAATGGCAAGGTATAGTTAGAGACAGGAGGAAGAACGAAC-AAACACC 1364
|||||||||||||| |||||||| || |||||||||| || |||| | | | |||| ||
Sbjct 1360 AATGTGTTAAGGCACTGGCAAGGGATGGTTAGAGACAAGAAAAAGA-CTATCCAAACGCC 1418
Query 1365 AGAAACCGACAACAAC-GATAACAATAACAATGGCGATATCGATTCTGGCGAAAGTCCGG 1423
||| |||||||||||| | ||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 1419 AGACACCGACAACAACAG-TAACAATAACAATGGTGATATTGATTCTGGAGAAAGTCCGG 1477
Query 1424 TTCAGTCAGAAGTTGCTTATGA-TTTCAGATTTTCGGGTAGACAACCACCGATTTTACAA 1482
||||| |||||||||||| ||| ||| |||||||||||||||||| | ||||||||||||
Sbjct 1478 TTCAGACAGAAGTTGCTTCTGAGTTT-AGATTTTCGGGTAGACAATCGCCGATTTTACAA 1536
Query 1483 GAGATACCGATACAAGAGCAAACCGAAAGGTGA 1515
||||||| |||||||||| |||| |||||||||
Sbjct 1537 GAGATACAGATACAAGAGAAAACTGAAAGGTGA 1569
> AT3G45300.1 | Symbols: IVD, ATIVD, IVDH | isovaleryl-CoA-dehydrogenase
| chr3:16620203-16625048 REVERSE LENGTH=2886
Length=2886
Score = 331 bits (179), Expect = 1e-89
Identities = 234/260 (90%), Gaps = 6/260 (2%)
Strand=Plus/Minus
Query 1259 AGATGGGGTCAAGCTACAAGAGAGCAATCTTAGAAGAACAACTAGCAAATGTGTTAAGGC 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993 AGATGGGGTCAAGCTACAAGAGAGCAATCTTAGAAGAACAACTAGCAAATGTGTTAAGGC 1934
Query 1319 AATGGCAAGGTATAGTTAGAGACAGGAGGAAGAACGAAC-AAACACCAGAAACCGACAAC 1377
| |||||||| || |||||||||| || |||| | | | |||| ||||| |||||||||
Sbjct 1933 ACTGGCAAGGGATGGTTAGAGACAAGAAAAAGA-CTATCCAAACGCCAGACACCGACAAC 1875
Query 1378 AAC-GATAACAATAACAATGGCGATATCGATTCTGGCGAAAGTCCGGTTCAGTCAGAAGT 1436
||| | ||||||||||||||| ||||| |||||||| ||||||||||||||| |||||||
Sbjct 1874 AACAG-TAACAATAACAATGGTGATATTGATTCTGGAGAAAGTCCGGTTCAGACAGAAGT 1816
Query 1437 TGCTTATGA-TTTCAGATTTTCGGGTAGACAACCACCGATTTTACAAGAGATACCGATAC 1495
||||| ||| ||| |||||||||||||||||| | ||||||||||||||||||| |||||
Sbjct 1815 TGCTTCTGAGTTT-AGATTTTCGGGTAGACAATCGCCGATTTTACAAGAGATACAGATAC 1757
Query 1496 AAGAGCAAACCGAAAGGTGA 1515
||||| |||| |||||||||
Sbjct 1756 AAGAGAAAACTGAAAGGTGA 1737
Score = 272 bits (147), Expect = 7e-72
Identities = 165/174 (95%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 922 ATAGTGCTAGTGATCGGGACGAAACTAGAGATGATAGTAGCGAAAATGGCTGTCACAATT 981
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2751 ATAGTTTTAGTGATCGGGACGAAACTAGAGATGATAGTAGCGAAAATGGCGGTCACAATT 2692
Query 982 AAGGAGAATAACAGTGTAATTAGAGGAACCCCTCTTGTTGAGCCAAACGACACGCATTTC 1041
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 2691 AAGGAGAATAACAGTGTAATTAGAGGAACCCCTCTCGTTGAGTCAAACGACACGCATTTC 2632
Query 1042 TGGTTTTCCAATCCTCGTATCCTCATAAGTATTCTACACTACACGCTGTTTCTG 1095
|||||||||||||||||| | ||| |||| ||||||||||||||||||||||||
Sbjct 2631 TGGTTTTCCAATCCTCGTTTTCTCTTAAGCATTCTACACTACACGCTGTTTCTG 2578
Score = 111 bits (60), Expect = 2e-23
Identities = 66/69 (96%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 1132 TGGCAACTTGGGATTAACTCTTGCTACCATGATAACCGAGGGATCATCATCACACGACTT 1191
|||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 2356 TGGCAATTTGGGATTAACTCTTGCTACCATGATAACCAAGGGATCATAATCACACGACTT 2297
Query 1192 GTATTAGCG 1200
|||||||||
Sbjct 2296 GTATTAGCG 2288
Score = 102 bits (55), Expect = 9e-21
Identities = 62/65 (95%), Gaps = 1/65 (2%)
Strand=Plus/Minus
Query 1196 TAGCGGTGACAGTCCAGTTCTTGAGCAGCTACATAACACTGCCTCTTTATGCCATTGTAA 1255
||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 2182 TAG-GGTGACAGTCCAGTTCTTGAGCAGCTACATTACATTGCCTCTTTATGCCATTGTAA 2124
Query 1256 CTCAG 1260
|||||
Sbjct 2123 CTCAG 2119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74748611505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5