BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897324
Length=2622
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60410.2 | Symbols: ATSIZ1, SIZ1 | DNA-binding protein with ... 2222 0.0
> AT5G60410.2 | Symbols: ATSIZ1, SIZ1 | DNA-binding protein with
MIZ/SP-RING zinc finger, PHD-finger and SAP domain | chr5:24294890-24301115
FORWARD LENGTH=3219
Length=3219
Score = 2222 bits (1203), Expect = 0.0
Identities = 2206/2678 (82%), Gaps = 118/2678 (4%)
Strand=Plus/Plus
Query 1 ATGGATTTGGTCTCTAGTTGCAAGGAGAAACTTGCGTATTTTCGAATTAAAGAGCTTAAG 60
|||||||||| ||| ||| ||||| |||||| | |||||||| || |||||||| |||
Sbjct 239 ATGGATTTGGAAGCTAATTGTAAGGAAAAACTTTCATATTTTCGGATAAAAGAGCTCAAG 298
Query 61 GATGTGCTTAATCAGCTGGGACTTTCTAAACAGGGAAAGAAGCAGGACCTTGTCGAGCGG 120
|||||||| | ||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 299 GATGTGCTCACTCAGCTGGGACTTTCGAAACAGGGAAAGAAGCAGGAACTTGTCGACCGG 358
Query 121 ATCTTGAGCATTCTTTCTGATGAGCATGCGGCTAGGTTGTGGTCTAAAAAGGATGCCGTG 180
||||||| | ||||||||||||| || || || ||||||| |||||||||| || | |||
Sbjct 359 ATCTTGACCCTTCTTTCTGATGAACAAGCTGCCAGGTTGTTGTCTAAAAAGAATACAGTG 418
Query 181 GCAAGGGAA-AAGGTTGCAAAACTAGTGGAGGATGCATATAGGAAAATGCAAGCATGTGG 239
|||| |||| | ||||| ||| ||||||| ||| |||||||||||||||||| || |||
Sbjct 419 GCAAAGGAAGCA-GTTGCCAAATTAGTGGACGATACATATAGGAAAATGCAAGTATCTGG 477
Query 240 GGCAAGTGACGTAGCGTCAAAAGGACAAGTTAGTTCAGATATCAGTACTGTTAAAGTTAA 299
||||||||| |||| |||||||||||||| |||||||||| ||||| | | ||||||||
Sbjct 478 GGCAAGTGATTTAGCATCAAAAGGACAAGTGAGTTCAGATACCAGTAATCTGAAAGTTAA 537
Query 300 GGGAGAACTTGAAGATCACTTTCAACCAGAAACTAAAGTTCGGTGTCTTTGTGGAAGCTC 359
|||||| | |||||| | ||| |||||||||| ||||||||| ||| ||||||||| |||
Sbjct 538 GGGAGAGCCTGAAGACCCCTTCCAACCAGAAATTAAAGTTCGATGTGTTTGTGGAAACTC 597
Query 360 ACTAGAGACAGAGTCAATGATACAGTGCGAGGATCCGAGATGCCATGTCTGGGAGCATGT 419
||||| ||||| |||||||||||||| |||||||| ||||||||||| ||| |||||||
Sbjct 598 GCTAGAAACAGACTCAATGATACAGTGTGAGGATCCAAGATGCCATGTTTGGCAGCATGT 657
Query 420 TGGTTGTGTCATTTTCCCGGAGAAGCCTATGGAAGTTCATCCACCTCTTCCTGAATCATT 479
||| ||||| ||| |||| || ||||||||||| | ||||||| ||||| ||||||||
Sbjct 658 TGGCTGTGTTATTCTCCCAGATAAGCCTATGGATGGGAATCCACCACTTCCGGAATCATT 717
Query 480 TTACTGTGAAATCTGCCGACTTACCCGTGCTGACCCATTTTGGGTCACAATGGCGCATCC 539
||| |||||||||||||||||||| || ||||||||||||||||| ||| |||| |||||
Sbjct 718 TTATTGTGAAATCTGCCGACTTACTCGAGCTGACCCATTTTGGGTTACAGTGGCACATCC 777
Query 540 ATTGTATCCGGTGAAGATGACTGCAACGACGATCCCAACTGATGGTTCAAACTCAATGCA 599
| | | ||| |||| | ||||||||||||| ||||||| ||||||| ||| | |||||||
Sbjct 778 ACTCTCTCCAGTGAGGCTGACTGCAACGACTATCCCAAATGATGGTGCAAGCACAATGCA 837
Query 600 GAGTGTGGACAGAACATTTCAAATAACAAGGGCAGACAAAGA-CTTATTGGTGAAA-CAT 657
||||||||| |||||||||||||| |||||||||||||| || ||| |||| ||| ||
Sbjct 838 GAGTGTGGAGAGAACATTTCAAATCACAAGGGCAGACAAGGACCTT-TTGGCCAAACCA- 895
Query 658 GAGTACGATATTCAGGCTTGGTGTATGCTCTTGAATGACAAAGTTCTATTTAGGATGCAG 717
||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 896 GAGTACGATGTTCAGGCTTGGTGTATGCTCTTGAATGATAAAGTTCTCTTTAGGATGCAG 955
Query 718 TGGCCTCAATATGCAGATCTGCAAGTCAATGGTGTGCCTGTTCGTGCTATTAACCGACCC 777
|||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 956 TGGCCTCAGTATGCTGATCTGCAGGTCAATGGTGTGCCTGTACGTGCAATTAATCGACCT 1015
Query 778 GG-GTCACAGCTTCTGGGGGCCAATGGCCGCGATGATGGACCTATTATTACACCTTGTGT 836
|| | ||||||| |||| | ||| |||||||| |||||||| ||||||||| ||||| |
Sbjct 1016 GGAGG-ACAGCTTTTGGGAGTCAACGGCCGCGACGATGGACCCATTATTACATCTTGTAT 1074
Query 837 TAGAGATGGAATTAACAAGA-TATCCTTGAGTGGATGTGAC-TCCCGCAGTTTTTGTTT- 893
||| |||||| |||||| || |||||||||||||| ||||| | | | | |||||||||
Sbjct 1075 TAGGGATGGAGTTAACA-GAATATCCTTGAGTGGAGGTGACGTTCGG-ATTTTTTGTTTT 1132
Query 894 GGGTGTAAGACTTGTGAAGCG-ACGGACTCTCCAACAGGT-CTTAAACATGATTCCGGAT 951
||| || |||||||||||||| | ||||||| |||||||| || ||| ||||||| ||
Sbjct 1133 GGG-GTCAGACTTGTGAAGCGCA-GGACTCTACAACAGGTTCT-AAATTTGATTCCAGAA 1189
Query 952 GAAGATAAAGGTGA-ACCTTTTGAAGATGCTCTTGCGCGTGTACGCCGATGCATTGGAGG 1010
|| | |||||| || || |||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1190 GAGGGTAAAGGGGAGAC-TTTTGAAGATGCTCTTGCACGTGTCCGCCGATGCATTGGAGG 1248
Query 1011 TGCAACTGGAAATGATGATGCCGACAGTGACAGTGATATTGAGGTTGTCGCAGATTTCTT 1070
|| | |||| ||||| ||||||||||||| ||||| ||||| ||||| || ||||||||
Sbjct 1249 TGGAGGTGGAGATGATAATGCCGACAGTGATAGTGACATTGAAGTTGTTGCTGATTTCTT 1308
Query 1071 TGGTGTCAATCTCCGGTGTCCTATGAGCGGCTCTAGGATGAAAGTTGCTGGGAGATTTAA 1130
||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1309 CGGTGTCAATCTTCGGTGTCCTATGAGCGGTTCTAGGATAAAAGTTGCTGGGAGATTTTT 1368
Query 1131 ACTCTGTGTGCACATGGGATGTTTTGACCTTGAGGTGTTTGTGGAGCTGAATCAACGTTC 1190
|| ||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||
Sbjct 1369 ACCCTGTGTGCACATGGGCTGTTTTGACCTTGATGTGTTTGTGGAGTTGAATCAACGTTC 1428
Query 1191 CAGAAAGTGGCAATGTCCTATTTGTCTGAAGAACTACTCTCTGGAGCATATAATCATAGA 1250
|||||||||||| || ||||||||||||||||||||||| |||||||| ||||| | ||
Sbjct 1429 CAGAAAGTGGCAGTGCCCTATTTGTCTGAAGAACTACTCAGTGGAGCATGTAATCGTCGA 1488
Query 1251 TCCTTATTTTAACCGGATCACATCAAAGATGA-GACATTGTGATGAAGAGTTGACTGAGA 1309
||||||||||||||| ||||| || ||||||| | ||||||||||||||| ||||||| |
Sbjct 1489 TCCTTATTTTAACCGTATCACGTCTAAGATGAAG-CATTGTGATGAAGAGGTGACTGAAA 1547
Query 1310 TTGAAATGAAGCCTGATGGTTCTTGGCGTGTGAAGTTCAAAAGTGAAAGTGAGCGCAGGG 1369
||||| |||| |||||||||||||||||||| ||||||||||| || |||||||| ||||
Sbjct 1548 TTGAAGTGAAACCTGATGGTTCTTGGCGTGTAAAGTTCAAAAGAGAGAGTGAGCGAAGGG 1607
Query 1370 AATTGGGGGAACTCTCACAATGGCACTT-ACCTGATGGTAGTCTCTT-CTCCACAGTTGA 1427
|| |||||||||||||||| ||||| | |||||||||||| || || | || | | ||
Sbjct 1608 AACTGGGGGAACTCTCACAGTGGCA-TGCACCTGATGGTAGCCT-TTGCCCCTCTGCTGT 1665
Query 1428 TGAGATTAAACCCAAGATGGAAATGCTAACACCGGTTAAACAAGAAGGTTGCTCAGATGG 1487
||| ||||||| |||||||||||| || | | |||||| |||||||||| |||||||||
Sbjct 1666 TGATATTAAACGGAAGATGGAAATGTTA-C-C-GGTTAAGCAAGAAGGTTACTCAGATGG 1722
Query 1488 TCCAACCCCTTTAAAACTTGGAATAAGGAAGAATCGCAATGGTATTTGGGAAGTTAGCAA 1547
|||| |||| ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1723 TCCAGCCCCGCTAAAACTTGGAATAAGGAAGAATCGTAATGGCATTTGGGAAGTTAGCAA 1782
Query 1548 ACCTAATATTAATGGTTTGTCTTCCAGTAATAGGCAAGAGAAGCTTGAGTATCAGGAGCA 1607
|||||||| ||||| || |||||||||||||||||||| ||| ||| |||||||||| |
Sbjct 1783 ACCTAATACAAATGGATTATCTTCCAGTAATAGGCAAGAAAAGGTTGGGTATCAGGAGAA 1842
Query 1608 TAATGTTATACCAATGAGCAGTAGTGCCACTGGAAGTGGTAGGGATGGTGATGACCCTAG 1667
||| ||||||||||||| |||||||| |||||||||||||||||||||||||| | ||
Sbjct 1843 GAATATTATACCAATGAGTAGTAGTGCTACTGGAAGTGGTAGGGATGGTGATGATGCAAG 1902
Query 1668 CGTAAACCAGGACGCTGTTGGAACCTTTGATTTTGGAAACAATGGGATGGAGCTTGATTC 1727
|||||||||||| ||| ||||||| ||||| |||| | ||| || ||||| ||||||||
Sbjct 1903 CGTAAACCAGGATGCTATTGGAACTTTTGACTTTGTAGCCAACGGCATGGAACTTGATTC 1962
Query 1728 TC-TATCCATGAATGTAGATCCAAGCTACAACTTTATTGATAGGAATCATCAACCAGCAG 1786
| | ||||||||||| ||| || | || |||||| ||| || || | ||| | | |
Sbjct 1963 -CATTTCCATGAATGTTGATTCAGGTTATAACTTTCCTGACAGAAA-C--CAATCTG--G 2016
Query 1787 CAACGAGT--AA-TAATGAAGTCATCGTTTTAAGTGATTCTGATGAAGAAAATAATGTT- 1842
| | | || || |||||||||||||||| | |||||||||||||| || ||| || ||
Sbjct 2017 CGAGG-GTGGAAATAATGAAGTCATCGTTCTGAGTGATTCTGATGACGAGAATGAT-TTA 2074
Query 1843 GTAATCACTGG-GGGTTCTGCCTACAATGAGAA-TCAAACTGATGGCGGGGTAAATTTTC 1900
|| |||||| ||| |||| |||| || | |||||| ||||| || | | |||||
Sbjct 2075 GTGATCACTCCAGGGC-CTGCATACAGTG-GTTGTCAAACAGATGGTGGACTTACTTTTC 2132
Query 1901 CATTGCACCCACCTGT--TA-TTAACTCGTATAGTGAAGACCCTCACACCGTGGCAGGGA 1957
|| || |||| |||| || ||||||| |||| ||| ||||| |||| | | || |||
Sbjct 2133 CACTGAACCCTCCTGGAATAATTAACTCATATAATGAGGACCCACACAGCATAGCTGGGG 2192
Query 1958 ACAA-TTCGGGCTTGGGTCTTTTCGCCAAC-ATTGACGATGA-TTATGATATGCGCCTTT 2014
|| ||| ||||| ||||||||| || || || ||||| || ||||| || |||||
Sbjct 2193 G-AAGTTCAGGCTTAGGTCTTTTC---AATGAT-GATGATGAATT-TGATACGCCCCTTT 2246
Query 2015 GG-CAGTTTTCTTCGGAGCC-CCA-AGGCGGACCC-GGGTTCCAACTATTT-GCATCTGA 2069
|| || ||| |||| || | ||| | || ||| ||||||||||||||| | ||||||
Sbjct 2247 GGTCA-TTTCCTTCTGAAACTCCAGAAGC---CCCTGGGTTCCAACTATTTAG-ATCTGA 2301
Query 2070 TGCTGATGTATCAG-ATGGTTTAGTTGGCTTGGAGC--C-TGGTCCACTGGACTGTACCC 2125
|||||| || |||| | ||||||||||| ||| | | | | ||||||| ||||| | |
Sbjct 2302 TGCTGACGTTTCAGGA-GGTTTAGTTGGTTTGCATCATCATAGTCCACTAAACTGTTCTC 2360
Query 2126 CTGCAATAAGTAGTGGTTACACAATAGCTCCAGAGATATCATCAATGCCATCTGTTCCTA 2185
||| ||||| | | ||||| || || ||||| |||| |||||||| |||||||||||
Sbjct 2361 CTGAAATAAATGGAGGTTATACCATGGCTCCTGAGA---CATCAATGGCATCTGTTCCTG 2417
Query 2186 TGTTTCCAGAAT-TGGTTGGACGATGCGAAGCAGATGCAAACGATGGATTAGTCAACAAT 2244
|| |||| | | | | || |||| | | | | ||||||||||| |||| |||||
Sbjct 2418 TGGTTCCTGGCTCTACT-GGCCGAT-CT--G-A-A-GCAAACGATGGCCTAGTTGACAAT 2470
Query 2245 CCTCTTGCATTTAGTAGAGAGGATCCCTCACTTCAAATATTTCTT-CCAACAAGACCAGA 2303
|||||||||||| ||||||| ||||||||||||||||||||| || ||||||| ||||||
Sbjct 2471 CCTCTTGCATTTGGTAGAGACGATCCCTCACTTCAAATATTT-TTGCCAACAAAACCAGA 2529
Query 2304 TACCTCAGCTCAGTCTGATTT-AAGAAGTCAGGCCGAGGTGTCAAACGGAACCCC-TAGT 2361
| | ||||||||||| | ||| || || || || || ||||||| || | || ||||
Sbjct 2530 TGCTTCAGCTCAGTCGGGTTTTAAAAAC-CAAGCTGATATGTCAAATGGT-CTCCGTAGT 2587
Query 2362 GACGATTGGATCTCTCTTAGGCTTGGTGATCA-CG-----GGGAGA-CAATTG-G-TG-T 2411
|| || |||||||| |||||||| || ||| | || |||| | || | | | | |
Sbjct 2588 GAAGACTGGATCTCGCTTAGGCTAGGCGAT-AGCGCCTCTGGGA-ATCA-TGGAGATCCT 2644
Query 2412 --AA--ACAGA-GTTAATGAAAACAA-CC--CAG-TGTCGACCAGGGAGGGTACTCTGGA 2462
|| ||| | | | | || ||| || ||| |||| || ||||| ||| || ||||
Sbjct 2645 GCAACTACAAACGGGATT-AACTCAAGCCATCAGATGTCTACGAGGGAAGGTTCTATGGA 2703
Query 2463 TACTTTGTCAGAGACTGCGTTGTTGCTTCTGGGAATGAATGACAGTAGTAAGCAAGAGAA 2522
|||| |||||||||||| |||||||||||| |||||||||||||| | ||||| ||
Sbjct 2704 TACTACAACAGAGACTGCGTCGTTGCTTCTGGGTATGAATGACAGTAG-A--CAAGACAA 2760
Query 2523 GGCAA-GTAGACAAAGATCAGATAGTCCGTTTTCGTTTCCTCGGCAGAAGCGATCAGTAA 2581
||||| | || ||||||||||||| ||| ||||| |||||||| |||||||| || ||||
Sbjct 2761 GGCAAAGAAG-CAAAGATCAGATAATCCATTTTCATTTCCTCGCCAGAAGCGTTCTGTAA 2819
Query 2582 GACCCCGGCTGTATCTCTCAATTGACTCAGATTCAGAA 2619
|||| ||| |||| ||||| |||||||| ||||| |||
Sbjct 2820 GACCTCGGATGTACCTCTCCATTGACTCGGATTCTGAA 2857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130183217085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5