BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897334
Length=297
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45443.1 | Symbols: | unknown protein; Has 4 Blast hits to ... 261 3e-69
> AT3G45443.1 | Symbols: | unknown protein; Has 4 Blast hits to
4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:16667977-16669561 REVERSE LENGTH=998
Length=998
Score = 261 bits (141), Expect = 3e-69
Identities = 240/286 (84%), Gaps = 14/286 (5%)
Strand=Plus/Plus
Query 1 ATGATTCATCTGAAAAATGCA-GCAAATATTGATGCACATCTTTTGTTATTCAAGTCAAA 59
||||||||||||| ||||||| |||||| ||||||||||||| |||| ||||||| |||
Sbjct 154 ATGATTCATCTGAGAAATGCAGGCAAATGTTGATGCACATCTCCTGTTGTTCAAGT-AAA 212
Query 60 -TCTTTATGATTTTTGCCACTACAGTATCTTGTCCGTTCAATT-CTGTCTGATAATCATG 117
| ||| ||| || |||||||||||||||||||||||||||| ||||||||| | |||
Sbjct 213 CTTTTTCTGA--TTCGCCACTACAGTATCTTGTCCGTTCAATTTCTGTCTGAT--TGATG 268
Query 118 TCAAAATTGATGGCTTTT---TCATTGTTTGGAGTTGATGACAACACGAGAGCTCCAAAT 174
| || | | || ||||||||||| |||||||| |||||| ||||| |||||
Sbjct 269 GCCTTTTT--TCG-TTCAAAATCATTGTTTGGTGTTGATGAGAACACGGGAGCTGCAAAT 325
Query 175 CATAGGTATCAAATTCCAAAGATGAGGACTTGGCGTGAACATGATGGAATTGCCTTTGGA 234
|||||||||||||| ||||||| ||| |||||||||||||||| |||| ||| ||||| |
Sbjct 326 CATAGGTATCAAATGCCAAAGACGAGTACTTGGCGTGAACATGGTGGACTTGACTTTGTA 385
Query 235 TTCAACTTGCTGGAGAAAATTTCGTCGACCATTGGTGCAAAAGACA 280
|||| |||||||||||||||||| ||||||||||||| |||||||
Sbjct 386 TTCAGCTTGCTGGAGAAAATTTCATCGACCATTGGTGTGAAAGACA 431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13723095477
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5