BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897338
Length=537
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45480.1 | Symbols: | RING/U-box protein with C6HC-type zin... 383 1e-105
AT3G43750.1 | Symbols: | RING/U-box protein with C6HC-type zin... 152 3e-36
> AT3G45480.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger | chr3:16683204-16684592 REVERSE LENGTH=1208
Length=1208
Score = 383 bits (207), Expect = 1e-105
Identities = 383/465 (82%), Gaps = 24/465 (5%)
Strand=Plus/Plus
Query 1 ATGT-CTCATTACGGCTGCAAATCGAACTTGAA-TCTTAGAAGTTGTG-CCTATCTTTTG 57
|||| ||||| | ||||||| ||| ||| | || ||||||||| |||| || ||||||||
Sbjct 597 ATGTCCTCATGATGGCTGCACATCAAACCT-AACTCTTAGAAGCTGTGACC-ATCTTTTG 654
Query 58 ACACCTAAAGTACAA-A-AGATGTGGCAACGAAGGATCAAACAAGACTCGATTCCTCAAT 115
||||||||| | || | |||||||| || |||||||||| | || || |||||| ||
Sbjct 655 ACACCTAAA-CA-AAGAGAGATGTGGGAAAAAAGGATCAAAGAGGAGTCAATTCCTGTAT 712
Query 116 GGGACAGATTTCATTGCCCAAAACCAAGTTGCTCGGCTTGGATGTCGAAAACTAAGCTCT 175
| |||||||||||||||||||| ||||| |||| ||||| ||||||||| || |||||
Sbjct 713 GTGACAGATTTCATTGCCCAAATCCAAGGTGCTGGGCTTTGATGTCGAAGACGGAGCTCA 772
Query 176 TTGAATCTATC-GAAGAAGAGGGAGTTAGGAGATGTTGCTTTAAATGTCGTACACCCTTT 234
|||||||| | |||||||| ||||||||||||||||||| |||||| || | || ||||
Sbjct 773 CTGAATCTA-CTGAAGAAGATGGAGTTAGGAGATGTTGCTATAAATGCCGCAAACACTTT 831
Query 235 TGCATCAATTGCAAAGTTCCGTGGCATAGTAACTTGTCGTGCGACGAATACAGGAATTC- 293
|| || || ||||||||||||||||||||||||||||||||| | ||| ||| || |||
Sbjct 832 TGTATTAACTGCAAAGTTCCGTGGCATAGTAACTTGTCGTGCAAGGAACACAAGAGTTCC 891
Query 294 GCTTCCAAAGCCTACTACAATAGTGTGGCATCAATGTAGAAGTTGCCAACACATGATCGA 353
| | | |||||| ||||| |||||||| ||||||||||||||||| ||||| ||| |
Sbjct 892 GGT-CGTGAGCCTATTACAACAGTGTGGCGTCAATGTAGAAGTTGCCTACACAAGATAAA 950
Query 354 ACTATCGGACA-AACTC-T-C-TAAAATAACTTGCAGGTGTGGCTATACGTTTTGCTACA 409
||||||||| | ||| | | | | ||||||||||||||||||||| |||||||||
Sbjct 951 ACTATCGGA-AGAACGCATGCCTG---TAACTTGCAGGTGTGGCTATAAGTTTTGCTATG 1006
Query 410 CATGCGGAGCTCAATGGAAGCTTAGAGGTTG---CTCTCATCATC 451
|||| |||||||||||||||||| ||||||| |||||||||||
Sbjct 1007 CATGTGGAGCTCAATGGAAGCTTGGAGGTTGTTGCTCTCATCATC 1051
> AT3G43750.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger domain | chr3:15646460-15647566 FORWARD LENGTH=1041
Length=1041
Score = 152 bits (82), Expect = 3e-36
Identities = 225/290 (78%), Gaps = 25/290 (9%)
Strand=Plus/Plus
Query 33 TCTTAGAAGTTGTGCCTATCTTTTGACACCTAAAGTACAA-AAGATGTGGCAA-CGAAGG 90
||||| |||||||| | ||||||| ||||||||| || || ||| ||| || | ||||
Sbjct 627 TCTTACAAGTTGTGGCAATCTTTTAACACCTAAACTA-AAGGCGATATGG-AAGCAAAGG 684
Query 91 ATCAAACAAGACTCGATTCCTCAATG-GGACAGA-TTTCATTGCCCAAAACCAAGTTGCT 148
||| || | || | ||||| | | | ||| ||| ||| |||| ||||| || || ||||
Sbjct 685 ATCGAAGAGGAGTTGATTCTTGTA-GCGGAGAGAGTTT-ATTGTCCAAACCCGAGGTGCT 742
Query 149 C-GGCTTGGATGTCGAAAACTAAGCTCTTTGA-ATCTATC-GAAGAAGA-GGGAGT--TA 202
| || || ||||||||||| |||||| | | ||| | | |||||||| | ||| ||
Sbjct 743 CGGGATT-AATGTCGAAAACCGAGCTCTCT-ACATC-AACTGAAGAAGATGTAAGTACTA 799
Query 203 GGAGATGTTGCT-TTAAATGTC-GT-ACACCCTTTTGCATCAATTGCAAAGTTCCGTGGC 259
||| ||||| | ||||||| | || | ||||||||||||||| ||||||||||||||||
Sbjct 800 GGACTTGTTG-TGTTAAATG-CGGTGA-ACCCTTTTGCATCAACTGCAAAGTTCCGTGGC 856
Query 260 ATAGTAACTTGTCGTGCGACGAATACAGGA-ATTCGCTTCCAAAGCCTAC 308
||||||||||||| ||||| || |||| || ||| | | ||||| |||||
Sbjct 857 ATAGTAACTTGTCATGCGATGATTACAAGAGATTGGGT-CCAAATCCTAC 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25719883264
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5