BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897340
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45460.1 | Symbols: | IBR domain containing protein | chr3:... 1212 0.0
AT3G45480.1 | Symbols: | RING/U-box protein with C6HC-type zin... 614 9e-175
AT3G45510.1 | Symbols: | RING/U-box protein | chr3:16690790-16... 473 2e-132
> AT3G45460.1 | Symbols: | IBR domain containing protein | chr3:16678434-16680043
REVERSE LENGTH=1416
Length=1416
Score = 1212 bits (656), Expect = 0.0
Identities = 782/843 (93%), Gaps = 8/843 (1%)
Strand=Plus/Plus
Query 566 TGGTCATGAGG-AGATCCGCACCTGAGCAAGAGAACATCGCCTTGCTAATGGATGATGTA 624
|||||||| || |||| || |||||| |||||||||||||||||||||||||||||||
Sbjct 332 TGGTCATG-GGCAGATTAGCGCCTGAGAAAGAGAACATCGCCTTGCTAATGGATGATGTG 390
Query 625 CAACGCATAAGACGAGAACTGACATCTAGCATTCCTGTTACTGTGACTAAAAATCAAGCC 684
||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 391 CAATGCATAAGGCGAGAACTGACATCTAGCATTCCTGTTACTGTGACTGAAAATCAAGCC 450
Query 685 AAGTTTGCGTATAAGCTTTCAAAGGAATTAATAGGCATACGTACGCCTCCTACTGAGAAG 744
|||||||||| ||||||| ||||||||| |||| ||||||||||||||||||| ||| ||
Sbjct 451 AAGTTTGCGTTTAAGCTTGCAAAGGAATCAATAAGCATACGTACGCCTCCTACCGAGCAG 510
Query 745 AAGACTTGCGGCGGGGTTAGTATCGAACCTGAACCCATGTTTTCCGTTGCTTTATGTCGT 804
||| ||||||| | ||||| |||||||| ||||| |||||||| ||||||||||| |||
Sbjct 511 AAGGCTTGCGGTGAGGTTAATATCGAACATGAACTGATGTTTTCTGTTGCTTTATGCCGT 570
Query 805 CATCAATTCGGTGTGGAGTGGATGAAACAACATATAGAAGTGAGGCTAATCGAGGGAGAC 864
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 571 CATCAATTCGGTGTAGAGTGGATGAAACAACATATAGAAGTGAGACTAATCGAGGGAGAT 630
Query 865 GTACCGAGATGTCCTCATTATGGCTGCACATCAATCCTAACTCTTAAAAGCTGTGCCCAT 924
|| ||||||||||||||| ||||||||| |||||||||| |||||||||||||| |||||
Sbjct 631 GTTCCGAGATGTCCTCATGATGGCTGCAAATCAATCCTATCTCTTAAAAGCTGTTCCCAT 690
Query 925 CTTTTGACACCTAAACTAAAAGAGATGTGGGAACAAAGGATCAAAGAGGA-TTCAATTCC 983
|||||||||||||||||| |||||||||||||||| |||||||||||||| ||| || ||
Sbjct 691 CTTTTGACACCTAAACTAGAAGAGATGTGGGAACATAGGATCAAAGAGGAGTTC-ATCCC 749
Query 984 TGTATGTGACAGATTTCATTGCCCAAATCCAAGGTGCTGGGCTTTGATGTCGAAAACCGA 1043
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 750 TGTATGTGACAGATTTCATTGCCCAAATCCAAGGTGTTGGGCTTTGATGTCGAAAACCGA 809
Query 1044 GCTCTTTGAGTCTACTGAAGATGGAGTTAGGAGATGCTGCTTTAAATGCCGCAAACCCTT 1103
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 810 GCTCGTTGAGTCTACTGAAGATGGAGTTAGGAGATGCTGCTTTAAATGCCGCAAAGCCTT 869
Query 1104 TTGCATTAACTGCAAAGTTCTGTGGCATAGTAACTTGTCTTGCAAGGAATACAAGACGTT 1163
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 870 TTGCATTAACTGCAAAGTTCTGTGGCATAGTGACTTGTCATGCAAGGAATACAAGACGTT 929
Query 1164 GGGTCTAAATCCTAAAACAATATCGCGTCAATGTAAAAAGTGCCAACACATGATCAAACA 1223
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 GGGTCGAAATCCTAAAACAATATCGCGTCAATGTAAAAAGTGCCAACACATGATCAAACT 989
Query 1224 AACGCATAAAACCATCAATGTG-ACTTGCAGGTGTGGTTATTCGTTTTGCTACACATGTG 1282
||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||
Sbjct 990 GTCGCATAAAACCATCAATGTATA-TTGCAGGTGTGGTTATTCATTTTGCTACACATGTG 1048
Query 1283 GAGCTCAATGGAAGCTTGGAGGTTGCCGTCATCATAGCCAAATGGTGGCGGATGTGTTGG 1342
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1049 GAGCTCAATGGAAGCTTGGAGGTTGCCGTCATCATAACCAAATGGTGGCGGCTGTGTTGG 1108
Query 1343 TTCCCGGTTTTATCTTCT-TTTTTCTTTCAATGATTATTTGCTCAATTAGTCGTCGTGTT 1401
||| || |||| |||| | |||||| |||||||||||| || ||||||||||||||||||
Sbjct 1109 TTCTCGTTTTTTTCTT-TATTTTTCATTCAATGATTATGTGGTCAATTAGTCGTCGTGTT 1167
Query 1402 TAA 1404
|||
Sbjct 1168 TAA 1170
> AT3G45480.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger | chr3:16683204-16684592 REVERSE LENGTH=1208
Length=1208
Score = 614 bits (332), Expect = 9e-175
Identities = 635/775 (82%), Gaps = 45/775 (6%)
Strand=Plus/Plus
Query 566 TGGTCATGAGGAGATCCGCACCTGAGCA-AGAGAACATCGCCTTGCTAATGGATGATGTA 624
|||||||| ||||||| | ||| || | | |||| ||||||||| |||||||||| ||
Sbjct 275 TGGTCATGGGGAGATCTGTGCCTAAGGATA-AGAAAATCGCCTTGATAATGGATGAGGTG 333
Query 625 CAACGCATAAGACGAGAACTGACATCTAGCATTCCTGTTAC-TGTGACTAAAAATCAAGC 683
||||||||||||| | || | |||||||||| ||| || | |||| ||| ||| ||
Sbjct 334 CAACGCATAAGACAACAATTTTCATCTAGCATCCCT-TTTCTTGTGGCTAGTAATGAAAT 392
Query 684 CAAGTTTGCGTATAAGCTTTCAAAGGAATTAATAG--GCAT-ACGTAC-GCCT-CCTA-- 736
||||||| |||||| ||| |||||||| | ||| | | || | | || | ||||
Sbjct 393 TAAGTTTGTGTATAAACTTGCAAAGGAAACACTAGTTTC-TAACAT-CAGCATACCTAGG 450
Query 737 -CTGAGAAGAAGACTTGCGG---CGGGGTT----A--GTATCGAACCTGA-ACCCATGTT 785
|| ||||||||||||| || | | || | ||||| || ||| | ||||||
Sbjct 451 CCTCAGAAGAAGACTTGTGGTAACTGTTTTAACGATGGTATCAAAGGTGAGA-ACATGTT 509
Query 786 TTCCGTTGCTTTATGTC-GTCATCAATTCGGTGTGGAGTGGATGAAACAACATATAGAAG 844
||||| || |||||| | ||||| | ||| |||||||||| ||||| ||||||||||||
Sbjct 510 TTCCGCTGATTTATG-CAGTCATTACTTCTGTGTGGAGTGCATGAAGGAACATATAGAAG 568
Query 845 TGAGGCTAATCGAGGGAGACGTACCGAGATGTCCTCATTATGGCTGCACATCAATCCTAA 904
| || |||| |||||||| ||||||||||||||||| ||||||||||||||| |||||
Sbjct 569 TCAGTCTAAACGAGGGAGGTTTACCGAGATGTCCTCATGATGGCTGCACATCAAACCTAA 628
Query 905 CTCTTAAAAGCTGTGCCCATCTTTTGACACCTAAACTAAA-AGAGATGTGGGAACAAAGG 963
|||||| |||||||| |||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 629 CTCTTAGAAGCTGTGACCATCTTTTGACACCTAAAC-AAAGAGAGATGTGGGAAAAAAGG 687
Query 964 ATCAAAGAGGATTCAATTCCTGTATGTGACAGATTTCATTGCCCAAATCCAAGGTGCTGG 1023
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 ATCAAAGAGGAGTCAATTCCTGTATGTGACAGATTTCATTGCCCAAATCCAAGGTGCTGG 747
Query 1024 GCTTTGATGTCGAAAACCGAGCTCTTTGAGTCTACTGAAGA---TGGAGTTAGGAGATGC 1080
|||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||
Sbjct 748 GCTTTGATGTCGAAGACGGAGCTCACTGAATCTACTGAAGAAGATGGAGTTAGGAGATGT 807
Query 1081 TGCTTTAAATGCCGCAAACCCTTTTGCATTAACTGCAAAGTTCTGTGGCATAGTAACTTG 1140
|||| |||||||||||||| |||||| |||||||||||||||| ||||||||||||||||
Sbjct 808 TGCTATAAATGCCGCAAACACTTTTGTATTAACTGCAAAGTTCCGTGGCATAGTAACTTG 867
Query 1141 TCTTGCAAGGAATACAAGACGTTG-GGTC-TAAATCCTA--A-AACAATATCGCGTCAAT 1195
|| ||||||||| |||||| ||| |||| | | |||| | |||| | | ||||||||
Sbjct 868 TCGTGCAAGGAACACAAGA-GTTCCGGTCGTGAG-CCTATTACAACAGTGTGGCGTCAAT 925
Query 1196 GTAAAAAGT-GCCAACACATGATCAAACAAACGCATAAAAC-CAT-CAATGTGACTTGCA 1252
||| || || ||| ||||| ||| |||| | || | | ||| ||| | ||| |||||||
Sbjct 926 GTAGAA-GTTGCCTACACAAGATAAAACTATCGGA-AGAACGCATGCC-TGTAACTTGCA 982
Query 1253 GGTGTGGTTATTCGTTTTGCTACACATGTGGAGCTCAATGGAAGCTTGGAGGTTG 1307
||||||| ||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 983 GGTGTGGCTATAAGTTTTGCTATGCATGTGGAGCTCAATGGAAGCTTGGAGGTTG 1037
> AT3G45510.1 | Symbols: | RING/U-box protein | chr3:16690790-16691728
REVERSE LENGTH=774
Length=774
Score = 473 bits (256), Expect = 2e-132
Identities = 342/383 (89%), Gaps = 8/383 (2%)
Strand=Plus/Plus
Query 781 ATGTTTTCCGTTGCTTTATGTC-GTCATCAATTCGGTGTGGAGTGGATGAAACAACATAT 839
|||||||||| ||||||||| | ||||| | ||| |||||||||| |||||||||| |||
Sbjct 235 ATGTTTTCCGCTGCTTTATG-CAGTCATTACTTCTGTGTGGAGTGCATGAAACAACGTAT 293
Query 840 AGAAGTGAGGCTAATCGAGGGAGACGTACCGAGATGTCCTCATTATGGCTGCACATCAAT 899
||||||||| |||| |||||||| ||||| |||||||| | | ||||||||| ||||
Sbjct 294 AGAAGTGAGTCTAAACGAGGGAGGTGTACCTAGATGTCCGCGTCATGGCTGCAAATCAGC 353
Query 900 CCTAACTCTTAAAAGCTGTGCCCATCTTTTGACACCTAAACTAAA-AGAGATGTGGGAAC 958
||||||||||| ||| |||| |||||||||||||||||||| ||| ||||||||||||||
Sbjct 354 CCTAACTCTTAGAAGTTGTGACCATCTTTTGACACCTAAAC-AAAGAGAGATGTGGGAAC 412
Query 959 AAAGGATCAAAGAGGATTCAATTCCTGTATGTGACAGATTTCATTGCCCAAATCCAAGGT 1018
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 413 AAAGGATCAAAGAGGAGTCAATTCCTGTATGTAACAGATTTCATTGCCCAAATCCAAAGT 472
Query 1019 GCTGGGCTTTGATGTCGAAAACCGAGCTCT-TTGAGTCTACTGAAGATGGAGTTAGGAGA 1077
||||||||||||||||||| |||||||| | ||| || ||||| |||||||||||||||
Sbjct 473 GCTGGGCTTTGATGTCGAAGACCGAGCT-TACTGAATCCACTGACGATGGAGTTAGGAGA 531
Query 1078 TGCTGCTTTAAATGCCGCAAACCCTTTTGCATTAACTGCAAAG-TTCTGTGGCATAGTAA 1136
|| |||| ||||||||| ||||||||||||||| ||||||| | ||| ||||||||||||
Sbjct 532 TGTTGCTCTAAATGCCGTAAACCCTTTTGCATTGACTGCAATGTTTC-GTGGCATAGTAA 590
Query 1137 CTTGTCTTGCAAGGAATACAAGA 1159
|||||||||||||||||||||||
Sbjct 591 CTTGTCTTGCAAGGAATACAAGA 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69176351010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5