BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg897344 Length=867 Score E Sequences producing significant alignments: (Bits) Value AT3G45480.1 | Symbols: | RING/U-box protein with C6HC-type zin... 955 0.0 AT3G45510.1 | Symbols: | RING/U-box protein | chr3:16690790-16... 689 0.0 AT3G45460.1 | Symbols: | IBR domain containing protein | chr3:... 612 2e-174 > AT3G45480.1 | Symbols: | RING/U-box protein with C6HC-type zinc finger | chr3:16683204-16684592 REVERSE LENGTH=1208 Length=1208 Score = 955 bits (517), Expect = 0.0 Identities = 746/853 (87%), Gaps = 30/853 (4%) Strand=Plus/Plus Query 1 GTCATGGGGAGATCTGTGCCTAAGCATGAGAAAATCGCCATGCTAATAGATGATGTGCAA 60 |||||||||||||||||||||||| || ||||||||||| || |||| ||||| |||||| Sbjct 277 GTCATGGGGAGATCTGTGCCTAAGGATAAGAAAATCGCCTTGATAATGGATGAGGTGCAA 336 Query 61 CGCATCAGACAACAATTTTCATCTAGCATCCCTATTCTTGTGACTAGAAATCAAACTGAG 120 ||||| ||||||||||||||||||||||||||| |||||||| |||| ||| ||| | || Sbjct 337 CGCATAAGACAACAATTTTCATCTAGCATCCCTTTTCTTGTGGCTAGTAATGAAATTAAG 396 Query 121 TTTGTCTATAAACTTGCCAAGGAAACAATAGTTTCTAACACCAGCATACCTATGCCTCGT 180 ||||| ||||||||||| ||||||||| |||||||||||| ||||||||||| Sbjct 397 TTTGTGTATAAACTTGCAAAGGAAACACTAGTTTCTAACATCAGCATACCTA-------- 448 Query 181 GGTTCTCAGAAGAAGACTTGTGGTAACTGCTTTCACGATGATGTGGAAGGTGAGAAGATG 240 || ||||||||||||||||||||||||| ||| |||||| | | |||||||||| ||| Sbjct 449 GG-CCTCAGAAGAAGACTTGTGGTAACTGTTTTAACGATGGTATCAAAGGTGAGAACATG 507 Query 241 TTTTCCGTTGCTTTATGCAGTCATCACTTCTGTGTGGACTGCATGAAACAACATATAGAA 300 ||||||| || ||||||||||||| ||||||||||||| |||||||| ||||||||||| Sbjct 508 TTTTCCGCTGATTTATGCAGTCATTACTTCTGTGTGGAGTGCATGAAGGAACATATAGAA 567 Query 301 GTTAGTCTAAACGAGGGA-GTTGTACCGAGATGTCCTCATTATGGCTGCACATCAAACCT 359 || ||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| Sbjct 568 GTCAGTCTAAACGAGGGAGGTT-TACCGAGATGTCCTCATGATGGCTGCACATCAAACCT 626 Query 360 AACACTTAAAATCTGTGCCCATCTTTTGACACCTAAACTAAAG-GAGATGTGGGAACATA 418 ||| |||| || ||||| |||||||||||||||||||| |||| |||||||||||| | | Sbjct 627 AACTCTTAGAAGCTGTGACCATCTTTTGACACCTAAAC-AAAGAGAGATGTGGGAAAAAA 685 Query 419 GGATAAAAGAGGAGTCAATTCCGGTATGTGACAGATTTCATTGCCCAAATCCAAGGTGCT 478 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 686 GGATCAAAGAGGAGTCAATTCCTGTATGTGACAGATTTCATTGCCCAAATCCAAGGTGCT 745 Query 479 GGGCATTGATGTCGAAAACCGAGCTTGTTGAATCTACTGAAGA---TGGAGTTAGGAGAT 535 |||| ||||||||||| || ||||| ||||||||||||||| |||||||||||||| Sbjct 746 GGGCTTTGATGTCGAAGACGGAGCTCACTGAATCTACTGAAGAAGATGGAGTTAGGAGAT 805 Query 536 ACTGCTTTAAATGCCGTAAACACTTTTGCATTACCTGCAAAGTTCTGTGGCATAGTAACT 595 |||| ||||||||| ||||||||||| |||| ||||||||||| |||||||||||||| Sbjct 806 GTTGCTATAAATGCCGCAAACACTTTTGTATTAACTGCAAAGTTCCGTGGCATAGTAACT 865 Query 596 TGTCTTGCAAGGAATACAAGAGTTC-GGTTCAAAAGCCTACTACAACAGTGTGGCGTCAA 654 |||| ||||||||| |||||||||| ||| | |||||| ||||||||||||||||||| Sbjct 866 TGTCGTGCAAGGAACACAAGAGTTCCGGT-CGTGAGCCTATTACAACAGTGTGGCGTCAA 924 Query 655 TGTAGAAGTTGCCAACACATGATAAAACTATCGGGAA-AATGCAT-CAATGTCACTTGCA 712 ||||||||||||| ||||| |||||||||||||| || || |||| | ||| ||||||| Sbjct 925 TGTAGAAGTTGCCTACACAAGATAAAACTATCGG-AAGAACGCATGCC-TGTAACTTGCA 982 Query 713 GGTGTGGCTATAGGTTTTGCTATGCATGTGGAGCCCAATGGAAGCTTGGAGGTTG---CT 769 |||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || Sbjct 983 GGTGTGGCTATAAGTTTTGCTATGCATGTGGAGCTCAATGGAAGCTTGGAGGTTGTTGCT 1042 Query 770 CTCATCATCGCCAAGCGGTGATGGAACTGGTGGTTGGTTTAGTCCTCATTTTTCTCG-TT 828 ||||||||| ||||| ||||||||| ||| | | | |||||||||||||||| | || Sbjct 1043 CTCATCATCTCCAAGAGGTGATGGAT-TGG-G-TAGCAATAGTCCTCATTTTTCTTGCTT 1099 Query 829 TCCATAGGTCTTT 841 || || |||||| Sbjct 1100 TCG-TAAGTCTTT 1111 > AT3G45510.1 | Symbols: | RING/U-box protein | chr3:16690790-16691728 REVERSE LENGTH=774 Length=774 Score = 689 bits (373), Expect = 0.0 Identities = 565/656 (86%), Gaps = 20/656 (3%) Strand=Plus/Plus Query 4 ATGGGGAGATCTGTGCCTAAGCATGAGAAAATCGCCATGCTAATAGATGATGTGCAACGC 63 |||| ||||||||||||| | ||||||||| | ||| ||||||| ||||| || || ||| Sbjct 1 ATGGAGAGATCTGTGCCTCACCATGAGAAATTTGCCTTGCTAATGGATGACGTCCACCGC 60 Query 64 ATCAGACAACAATTTTCATCTAGCATCCCTATTCTTGTGACTA-GAAATCAAACTGAGTT 122 ||||||||||||||| ||| |||||||||||||||||| || | |||| ||| | || || Sbjct 61 ATCAGACAACAATTTACATTTAGCATCCCTATTCTTGTTAC-AGGAAAGCAAGC-GAATT 118 Query 123 TGT-C-TATAAACTTGCCAAGGAAACAATAGTTTCTAACACCAGCATACCTATGCCTCGT 180 | | | ||||| ||||| ||||||||| |||||||| || || || ||||||||||||| Sbjct 119 T-TACGTATAAGCTTGCAAAGGAAACACTAGTTTCTCGCAACATCAGACCTATGCCTCGT 177 Query 181 GGTTCTCAGAAGAAGACTTGTGGTAA-CTGCTTTCACGATGATGTGGAAGGTGAGAAGAT 239 | ||||||||||||||||||| || |||||| |||||| | |||||| || |||| Sbjct 178 ACTACTCAGAAGAAGACTTGTGG-AATTTGCTTTGTGGATGATATCGAAGGTCAGGAGAT 236 Query 240 GTTTTCCGTTGCTTTATGCAGTCATCACTTCTGTGTGGACTGCATGAAACAACATATAGA 299 |||||||| |||||||||||||||| ||||||||||||| ||||||||||||| |||||| Sbjct 237 GTTTTCCGCTGCTTTATGCAGTCATTACTTCTGTGTGGAGTGCATGAAACAACGTATAGA 296 Query 300 AGTTAGTCTAAACGAGGGAGTTGTACCGAGATGTCCTCATTATGGCTGCACATCAAACCT 359 ||| |||||||||||||||| |||||| |||||||| | | ||||||||| |||| ||| Sbjct 297 AGTGAGTCTAAACGAGGGAGGTGTACCTAGATGTCCGCGTCATGGCTGCAAATCAGCCCT 356 Query 360 AACACTTA-AAATCTGTGCCCATCTTTTGACACCTAAACTAAAG-GAGATGTGGGAACAT 417 ||| |||| || | |||| |||||||||||||||||||| |||| |||||||||||||| Sbjct 357 AACTCTTAGAAGT-TGTGACCATCTTTTGACACCTAAAC-AAAGAGAGATGTGGGAACAA 414 Query 418 AGGATAAAAGAGGAGTCAATTCCGGTATGTGACAGATTTCATTGCCCAAATCCAAGGTGC 477 ||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| |||| Sbjct 415 AGGATCAAAGAGGAGTCAATTCCTGTATGTAACAGATTTCATTGCCCAAATCCAAAGTGC 474 Query 478 TGGGCATTGATGTCGAAAACCGAGCTTGTTGAATCTACTGAAGATGGAGTTAGGAGATAC 537 ||||| ||||||||||| ||||||||| |||||| ||||| |||||||||||||||| Sbjct 475 TGGGCTTTGATGTCGAAGACCGAGCTTACTGAATCCACTGACGATGGAGTTAGGAGATGT 534 Query 538 TGCTTTAAATGCCGTAAACACTTTTGCATT-ACCTGCAAAG-TTCTGTGGCATAGTAACT 595 |||| |||||||||||||| |||||||||| | |||||| | ||| |||||||||||||| Sbjct 535 TGCTCTAAATGCCGTAAACCCTTTTGCATTGA-CTGCAATGTTTC-GTGGCATAGTAACT 592 Query 596 TGTCTTGCAAGGAATACAAGA-GTTCGGTTCAA-AAGCCTACTACAACAGTGTGGC 649 ||||||||||||||||||||| | ||| || ||| |||||||||||||||||| Sbjct 593 TGTCTTGCAAGGAATACAAGATGAAGGGT--AACAAGGCTACTACAACAGTGTGGC 646 Score = 132 bits (71), Expect = 7e-30 Identities = 83/89 (93%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 714 GTGTGGCTATAGGTTTTGCTATGCATGTGGAGCCCAATGGAAGCTTGGAGGTTGCTCTCA 773 ||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 640 GTGTGGCTATACGTTTTGCTATGCATGCGGAACCCAATGGAAGCTTGGAGGTTGCTCTCA 699 Query 774 TCATCGCCAAGCGGTGATGGAACTGGTGG 802 |||||||||| ||||||| ||||||||| Sbjct 700 TCATCGCCAATTGGTGATGAAACTGGTGG 728 > AT3G45460.1 | Symbols: | IBR domain containing protein | chr3:16678434-16680043 REVERSE LENGTH=1416 Length=1416 Score = 612 bits (331), Expect = 2e-174 Identities = 647/791 (82%), Gaps = 55/791 (7%) Strand=Plus/Plus Query 1 GTCATGGGGAGATCT-GTGCCTAAGCATGAGAAAATCGCCATGCTAATAGATGATGTGCA 59 |||||||| |||| | | |||| || | ||||| |||||| ||||||| ||||||||||| Sbjct 334 GTCATGGGCAGAT-TAGCGCCTGAGAAAGAGAACATCGCCTTGCTAATGGATGATGTGCA 392 Query 60 ACGCATCAGACAACAATTTTCATCTAGCATCCCTATT-CTTGTGACTAG-AAATCAAACT 117 | |||| || | | || | |||||||||| ||| || | ||||||| | ||||||| | Sbjct 393 ATGCATAAGGCGAGAACTGACATCTAGCATTCCTGTTAC-TGTGACT-GAAAATCAAGCC 450 Query 118 GAGTTTGTC-TATAAACTTGCCAAGGAAACAATAGTTTCTAACACCAGCATACCTATGCC 176 |||||| | | ||| ||||| |||| | | || || | ||||||| || ||| Sbjct 451 AAGTTTG-CGTTTAAGCTTGCAAAGG-----A-A---TC-AATA--AGCATACGTACGCC 497 Query 177 TCGTGGTTCTC-AGAAGAAGACTTGTGGTAACTGCTTTCACGATGATGTGGAAGGTGAGA 235 || | | | || ||||| |||| ||| | | || | || | | ||| ||| | Sbjct 498 TC---CTAC-CGAGCAGAAGGCTTGCGGTGA--G-GTT-A--AT-A--TCGAACATGA-A 543 Query 236 -AGATGTTTTCCGTTGCTTTATGCAGTCATCACTTCTGTGTGGACTGCATGAAACAACAT 294 ||||||||| |||||||||||| ||||||| ||| |||| || || |||||||||||| Sbjct 544 CTGATGTTTTCTGTTGCTTTATGCCGTCATCAATTCGGTGTAGAGTGGATGAAACAACAT 603 Query 295 ATAGAAGTTAGTCTAAACGAGGGAGTTGTACCGAGATGTCCTCATTATGGCTGCACATCA 354 |||||||| || |||| |||||||| ||| ||||||||||||||| ||||||||| |||| Sbjct 604 ATAGAAGTGAGACTAATCGAGGGAGATGTTCCGAGATGTCCTCATGATGGCTGCAAATCA 663 Query 355 AACCTAACACTTAAAATCTGTGCCCATCTTTTGACACCTAAACTA-AAGGAGATGTGGGA 413 | |||| | ||||||| |||| ||||||||||||||||||||||| || ||||||||||| Sbjct 664 ATCCTATCTCTTAAAAGCTGTTCCCATCTTTTGACACCTAAACTAGAA-GAGATGTGGGA 722 Query 414 ACATAGGATAAAAGAGGAG-TCAATTCCGGTATGTGACAGATTTCATTGCCCAAATCCAA 472 ||||||||| ||||||||| || || || ||||||||||||||||||||||||||||||| Sbjct 723 ACATAGGATCAAAGAGGAGTTC-ATCCCTGTATGTGACAGATTTCATTGCCCAAATCCAA 781 Query 473 GGTGCTGGGCATTGATGTCGAAAACCGAGCTTGTTGAATCTACTGAAGATGGAGTTAGGA 532 |||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 782 GGTGTTGGGCTTTGATGTCGAAAACCGAGCTCGTTGAGTCTACTGAAGATGGAGTTAGGA 841 Query 533 GATACTGCTTTAAATGCCGTAAA-CACTTTTGCATTACCTGCAAAGTTCTGTGGCATAGT 591 ||| ||||||||||||||| ||| | ||||||||||| |||||||||||||||||||||| Sbjct 842 GATGCTGCTTTAAATGCCGCAAAGC-CTTTTGCATTAACTGCAAAGTTCTGTGGCATAGT 900 Query 592 AACTTGTCTTGCAAGGAATACAAGA-GTTCGGTTCAAAAGCCTACTACAACAGTGTGGCG 650 ||||||| |||||||||||||||| ||| ||| | ||| |||| | |||| | | ||| Sbjct 901 GACTTGTCATGCAAGGAATACAAGACGTTGGGT-CGAAATCCTA--A-AACAATATCGCG 956 Query 651 TCAATGTAGAA-GTTGCCAACACATGATAAAACTATCGGG-AAAATGCATCAATGTC-AC 707 |||||||| || || ||||||||||||| ||||| ||| |||| ||||||||| | Sbjct 957 TCAATGTAAAAAGT-GCCAACACATGATCAAACTGTCGCATAAAAC-CATCAATGTATA- 1013 Query 708 TTGCAGGTGTGGCTATAGGTTTTGCTATGCATGTGGAGCCCAATGGAAGCTTGGAGGTTG 767 |||||||||||| ||| |||||||| |||||||||| |||||||||||||||||||| Sbjct 1014 TTGCAGGTGTGGTTATTCATTTTGCTACACATGTGGAGCTCAATGGAAGCTTGGAGGTTG 1073 Query 768 CTC-TCATCAT 777 | | ||||||| Sbjct 1074 C-CGTCATCAT 1083 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42297151774 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5