BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897344
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45480.1 | Symbols: | RING/U-box protein with C6HC-type zin... 955 0.0
AT3G45510.1 | Symbols: | RING/U-box protein | chr3:16690790-16... 689 0.0
AT3G45460.1 | Symbols: | IBR domain containing protein | chr3:... 612 2e-174
> AT3G45480.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger | chr3:16683204-16684592 REVERSE LENGTH=1208
Length=1208
Score = 955 bits (517), Expect = 0.0
Identities = 746/853 (87%), Gaps = 30/853 (4%)
Strand=Plus/Plus
Query 1 GTCATGGGGAGATCTGTGCCTAAGCATGAGAAAATCGCCATGCTAATAGATGATGTGCAA 60
|||||||||||||||||||||||| || ||||||||||| || |||| ||||| ||||||
Sbjct 277 GTCATGGGGAGATCTGTGCCTAAGGATAAGAAAATCGCCTTGATAATGGATGAGGTGCAA 336
Query 61 CGCATCAGACAACAATTTTCATCTAGCATCCCTATTCTTGTGACTAGAAATCAAACTGAG 120
||||| ||||||||||||||||||||||||||| |||||||| |||| ||| ||| | ||
Sbjct 337 CGCATAAGACAACAATTTTCATCTAGCATCCCTTTTCTTGTGGCTAGTAATGAAATTAAG 396
Query 121 TTTGTCTATAAACTTGCCAAGGAAACAATAGTTTCTAACACCAGCATACCTATGCCTCGT 180
||||| ||||||||||| ||||||||| |||||||||||| |||||||||||
Sbjct 397 TTTGTGTATAAACTTGCAAAGGAAACACTAGTTTCTAACATCAGCATACCTA-------- 448
Query 181 GGTTCTCAGAAGAAGACTTGTGGTAACTGCTTTCACGATGATGTGGAAGGTGAGAAGATG 240
|| ||||||||||||||||||||||||| ||| |||||| | | |||||||||| |||
Sbjct 449 GG-CCTCAGAAGAAGACTTGTGGTAACTGTTTTAACGATGGTATCAAAGGTGAGAACATG 507
Query 241 TTTTCCGTTGCTTTATGCAGTCATCACTTCTGTGTGGACTGCATGAAACAACATATAGAA 300
||||||| || ||||||||||||| ||||||||||||| |||||||| |||||||||||
Sbjct 508 TTTTCCGCTGATTTATGCAGTCATTACTTCTGTGTGGAGTGCATGAAGGAACATATAGAA 567
Query 301 GTTAGTCTAAACGAGGGA-GTTGTACCGAGATGTCCTCATTATGGCTGCACATCAAACCT 359
|| ||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||
Sbjct 568 GTCAGTCTAAACGAGGGAGGTT-TACCGAGATGTCCTCATGATGGCTGCACATCAAACCT 626
Query 360 AACACTTAAAATCTGTGCCCATCTTTTGACACCTAAACTAAAG-GAGATGTGGGAACATA 418
||| |||| || ||||| |||||||||||||||||||| |||| |||||||||||| | |
Sbjct 627 AACTCTTAGAAGCTGTGACCATCTTTTGACACCTAAAC-AAAGAGAGATGTGGGAAAAAA 685
Query 419 GGATAAAAGAGGAGTCAATTCCGGTATGTGACAGATTTCATTGCCCAAATCCAAGGTGCT 478
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 686 GGATCAAAGAGGAGTCAATTCCTGTATGTGACAGATTTCATTGCCCAAATCCAAGGTGCT 745
Query 479 GGGCATTGATGTCGAAAACCGAGCTTGTTGAATCTACTGAAGA---TGGAGTTAGGAGAT 535
|||| ||||||||||| || ||||| ||||||||||||||| ||||||||||||||
Sbjct 746 GGGCTTTGATGTCGAAGACGGAGCTCACTGAATCTACTGAAGAAGATGGAGTTAGGAGAT 805
Query 536 ACTGCTTTAAATGCCGTAAACACTTTTGCATTACCTGCAAAGTTCTGTGGCATAGTAACT 595
|||| ||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||
Sbjct 806 GTTGCTATAAATGCCGCAAACACTTTTGTATTAACTGCAAAGTTCCGTGGCATAGTAACT 865
Query 596 TGTCTTGCAAGGAATACAAGAGTTC-GGTTCAAAAGCCTACTACAACAGTGTGGCGTCAA 654
|||| ||||||||| |||||||||| ||| | |||||| |||||||||||||||||||
Sbjct 866 TGTCGTGCAAGGAACACAAGAGTTCCGGT-CGTGAGCCTATTACAACAGTGTGGCGTCAA 924
Query 655 TGTAGAAGTTGCCAACACATGATAAAACTATCGGGAA-AATGCAT-CAATGTCACTTGCA 712
||||||||||||| ||||| |||||||||||||| || || |||| | ||| |||||||
Sbjct 925 TGTAGAAGTTGCCTACACAAGATAAAACTATCGG-AAGAACGCATGCC-TGTAACTTGCA 982
Query 713 GGTGTGGCTATAGGTTTTGCTATGCATGTGGAGCCCAATGGAAGCTTGGAGGTTG---CT 769
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 983 GGTGTGGCTATAAGTTTTGCTATGCATGTGGAGCTCAATGGAAGCTTGGAGGTTGTTGCT 1042
Query 770 CTCATCATCGCCAAGCGGTGATGGAACTGGTGGTTGGTTTAGTCCTCATTTTTCTCG-TT 828
||||||||| ||||| ||||||||| ||| | | | |||||||||||||||| | ||
Sbjct 1043 CTCATCATCTCCAAGAGGTGATGGAT-TGG-G-TAGCAATAGTCCTCATTTTTCTTGCTT 1099
Query 829 TCCATAGGTCTTT 841
|| || ||||||
Sbjct 1100 TCG-TAAGTCTTT 1111
> AT3G45510.1 | Symbols: | RING/U-box protein | chr3:16690790-16691728
REVERSE LENGTH=774
Length=774
Score = 689 bits (373), Expect = 0.0
Identities = 565/656 (86%), Gaps = 20/656 (3%)
Strand=Plus/Plus
Query 4 ATGGGGAGATCTGTGCCTAAGCATGAGAAAATCGCCATGCTAATAGATGATGTGCAACGC 63
|||| ||||||||||||| | ||||||||| | ||| ||||||| ||||| || || |||
Sbjct 1 ATGGAGAGATCTGTGCCTCACCATGAGAAATTTGCCTTGCTAATGGATGACGTCCACCGC 60
Query 64 ATCAGACAACAATTTTCATCTAGCATCCCTATTCTTGTGACTA-GAAATCAAACTGAGTT 122
||||||||||||||| ||| |||||||||||||||||| || | |||| ||| | || ||
Sbjct 61 ATCAGACAACAATTTACATTTAGCATCCCTATTCTTGTTAC-AGGAAAGCAAGC-GAATT 118
Query 123 TGT-C-TATAAACTTGCCAAGGAAACAATAGTTTCTAACACCAGCATACCTATGCCTCGT 180
| | | ||||| ||||| ||||||||| |||||||| || || || |||||||||||||
Sbjct 119 T-TACGTATAAGCTTGCAAAGGAAACACTAGTTTCTCGCAACATCAGACCTATGCCTCGT 177
Query 181 GGTTCTCAGAAGAAGACTTGTGGTAA-CTGCTTTCACGATGATGTGGAAGGTGAGAAGAT 239
| ||||||||||||||||||| || |||||| |||||| | |||||| || ||||
Sbjct 178 ACTACTCAGAAGAAGACTTGTGG-AATTTGCTTTGTGGATGATATCGAAGGTCAGGAGAT 236
Query 240 GTTTTCCGTTGCTTTATGCAGTCATCACTTCTGTGTGGACTGCATGAAACAACATATAGA 299
|||||||| |||||||||||||||| ||||||||||||| ||||||||||||| ||||||
Sbjct 237 GTTTTCCGCTGCTTTATGCAGTCATTACTTCTGTGTGGAGTGCATGAAACAACGTATAGA 296
Query 300 AGTTAGTCTAAACGAGGGAGTTGTACCGAGATGTCCTCATTATGGCTGCACATCAAACCT 359
||| |||||||||||||||| |||||| |||||||| | | ||||||||| |||| |||
Sbjct 297 AGTGAGTCTAAACGAGGGAGGTGTACCTAGATGTCCGCGTCATGGCTGCAAATCAGCCCT 356
Query 360 AACACTTA-AAATCTGTGCCCATCTTTTGACACCTAAACTAAAG-GAGATGTGGGAACAT 417
||| |||| || | |||| |||||||||||||||||||| |||| ||||||||||||||
Sbjct 357 AACTCTTAGAAGT-TGTGACCATCTTTTGACACCTAAAC-AAAGAGAGATGTGGGAACAA 414
Query 418 AGGATAAAAGAGGAGTCAATTCCGGTATGTGACAGATTTCATTGCCCAAATCCAAGGTGC 477
||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| ||||
Sbjct 415 AGGATCAAAGAGGAGTCAATTCCTGTATGTAACAGATTTCATTGCCCAAATCCAAAGTGC 474
Query 478 TGGGCATTGATGTCGAAAACCGAGCTTGTTGAATCTACTGAAGATGGAGTTAGGAGATAC 537
||||| ||||||||||| ||||||||| |||||| ||||| ||||||||||||||||
Sbjct 475 TGGGCTTTGATGTCGAAGACCGAGCTTACTGAATCCACTGACGATGGAGTTAGGAGATGT 534
Query 538 TGCTTTAAATGCCGTAAACACTTTTGCATT-ACCTGCAAAG-TTCTGTGGCATAGTAACT 595
|||| |||||||||||||| |||||||||| | |||||| | ||| ||||||||||||||
Sbjct 535 TGCTCTAAATGCCGTAAACCCTTTTGCATTGA-CTGCAATGTTTC-GTGGCATAGTAACT 592
Query 596 TGTCTTGCAAGGAATACAAGA-GTTCGGTTCAA-AAGCCTACTACAACAGTGTGGC 649
||||||||||||||||||||| | ||| || ||| ||||||||||||||||||
Sbjct 593 TGTCTTGCAAGGAATACAAGATGAAGGGT--AACAAGGCTACTACAACAGTGTGGC 646
Score = 132 bits (71), Expect = 7e-30
Identities = 83/89 (93%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 714 GTGTGGCTATAGGTTTTGCTATGCATGTGGAGCCCAATGGAAGCTTGGAGGTTGCTCTCA 773
||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 640 GTGTGGCTATACGTTTTGCTATGCATGCGGAACCCAATGGAAGCTTGGAGGTTGCTCTCA 699
Query 774 TCATCGCCAAGCGGTGATGGAACTGGTGG 802
|||||||||| ||||||| |||||||||
Sbjct 700 TCATCGCCAATTGGTGATGAAACTGGTGG 728
> AT3G45460.1 | Symbols: | IBR domain containing protein | chr3:16678434-16680043
REVERSE LENGTH=1416
Length=1416
Score = 612 bits (331), Expect = 2e-174
Identities = 647/791 (82%), Gaps = 55/791 (7%)
Strand=Plus/Plus
Query 1 GTCATGGGGAGATCT-GTGCCTAAGCATGAGAAAATCGCCATGCTAATAGATGATGTGCA 59
|||||||| |||| | | |||| || | ||||| |||||| ||||||| |||||||||||
Sbjct 334 GTCATGGGCAGAT-TAGCGCCTGAGAAAGAGAACATCGCCTTGCTAATGGATGATGTGCA 392
Query 60 ACGCATCAGACAACAATTTTCATCTAGCATCCCTATT-CTTGTGACTAG-AAATCAAACT 117
| |||| || | | || | |||||||||| ||| || | ||||||| | ||||||| |
Sbjct 393 ATGCATAAGGCGAGAACTGACATCTAGCATTCCTGTTAC-TGTGACT-GAAAATCAAGCC 450
Query 118 GAGTTTGTC-TATAAACTTGCCAAGGAAACAATAGTTTCTAACACCAGCATACCTATGCC 176
|||||| | | ||| ||||| |||| | | || || | ||||||| || |||
Sbjct 451 AAGTTTG-CGTTTAAGCTTGCAAAGG-----A-A---TC-AATA--AGCATACGTACGCC 497
Query 177 TCGTGGTTCTC-AGAAGAAGACTTGTGGTAACTGCTTTCACGATGATGTGGAAGGTGAGA 235
|| | | | || ||||| |||| ||| | | || | || | | ||| ||| |
Sbjct 498 TC---CTAC-CGAGCAGAAGGCTTGCGGTGA--G-GTT-A--AT-A--TCGAACATGA-A 543
Query 236 -AGATGTTTTCCGTTGCTTTATGCAGTCATCACTTCTGTGTGGACTGCATGAAACAACAT 294
||||||||| |||||||||||| ||||||| ||| |||| || || ||||||||||||
Sbjct 544 CTGATGTTTTCTGTTGCTTTATGCCGTCATCAATTCGGTGTAGAGTGGATGAAACAACAT 603
Query 295 ATAGAAGTTAGTCTAAACGAGGGAGTTGTACCGAGATGTCCTCATTATGGCTGCACATCA 354
|||||||| || |||| |||||||| ||| ||||||||||||||| ||||||||| ||||
Sbjct 604 ATAGAAGTGAGACTAATCGAGGGAGATGTTCCGAGATGTCCTCATGATGGCTGCAAATCA 663
Query 355 AACCTAACACTTAAAATCTGTGCCCATCTTTTGACACCTAAACTA-AAGGAGATGTGGGA 413
| |||| | ||||||| |||| ||||||||||||||||||||||| || |||||||||||
Sbjct 664 ATCCTATCTCTTAAAAGCTGTTCCCATCTTTTGACACCTAAACTAGAA-GAGATGTGGGA 722
Query 414 ACATAGGATAAAAGAGGAG-TCAATTCCGGTATGTGACAGATTTCATTGCCCAAATCCAA 472
||||||||| ||||||||| || || || |||||||||||||||||||||||||||||||
Sbjct 723 ACATAGGATCAAAGAGGAGTTC-ATCCCTGTATGTGACAGATTTCATTGCCCAAATCCAA 781
Query 473 GGTGCTGGGCATTGATGTCGAAAACCGAGCTTGTTGAATCTACTGAAGATGGAGTTAGGA 532
|||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 782 GGTGTTGGGCTTTGATGTCGAAAACCGAGCTCGTTGAGTCTACTGAAGATGGAGTTAGGA 841
Query 533 GATACTGCTTTAAATGCCGTAAA-CACTTTTGCATTACCTGCAAAGTTCTGTGGCATAGT 591
||| ||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||
Sbjct 842 GATGCTGCTTTAAATGCCGCAAAGC-CTTTTGCATTAACTGCAAAGTTCTGTGGCATAGT 900
Query 592 AACTTGTCTTGCAAGGAATACAAGA-GTTCGGTTCAAAAGCCTACTACAACAGTGTGGCG 650
||||||| |||||||||||||||| ||| ||| | ||| |||| | |||| | | |||
Sbjct 901 GACTTGTCATGCAAGGAATACAAGACGTTGGGT-CGAAATCCTA--A-AACAATATCGCG 956
Query 651 TCAATGTAGAA-GTTGCCAACACATGATAAAACTATCGGG-AAAATGCATCAATGTC-AC 707
|||||||| || || ||||||||||||| ||||| ||| |||| ||||||||| |
Sbjct 957 TCAATGTAAAAAGT-GCCAACACATGATCAAACTGTCGCATAAAAC-CATCAATGTATA- 1013
Query 708 TTGCAGGTGTGGCTATAGGTTTTGCTATGCATGTGGAGCCCAATGGAAGCTTGGAGGTTG 767
|||||||||||| ||| |||||||| |||||||||| ||||||||||||||||||||
Sbjct 1014 TTGCAGGTGTGGTTATTCATTTTGCTACACATGTGGAGCTCAATGGAAGCTTGGAGGTTG 1073
Query 768 CTC-TCATCAT 777
| | |||||||
Sbjct 1074 C-CGTCATCAT 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5