BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897345
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45480.1 | Symbols: | RING/U-box protein with C6HC-type zin... 723 0.0
AT3G45510.1 | Symbols: | RING/U-box protein | chr3:16690790-16... 713 0.0
AT3G43750.1 | Symbols: | RING/U-box protein with C6HC-type zin... 294 6e-79
> AT3G45480.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger | chr3:16683204-16684592 REVERSE LENGTH=1208
Length=1208
Score = 723 bits (391), Expect = 0.0
Identities = 571/655 (87%), Gaps = 24/655 (4%)
Strand=Plus/Plus
Query 1 ATGGGGAGATCTGTGCCTAAGGATGAGAAAATCGCCTTGCTAATGGATGATGTGCAACGC 60
|||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||
Sbjct 280 ATGGGGAGATCTGTGCCTAAGGATAAGAAAATCGCCTTGATAATGGATGAGGTGCAACGC 339
Query 61 ATCAGACAACAATTTAT-ATCTAGCATCCCTATTCTTGTGGCTAGAAATCAAACTGATTT 119
|| |||||||||||| | ||||||||||||| ||||||||||||| ||| ||| | | ||
Sbjct 340 ATAAGACAACAATTT-TCATCTAGCATCCCTTTTCTTGTGGCTAGTAATGAAATTAAGTT 398
Query 120 TGTCCATAAACTTGCAAAGGAAACAATAGTTTCTCGCCTCATCAGACCTATGCCTCGTAC 179
||| |||||||||||||||||||| |||||||| |||||| | || ||| | |
Sbjct 399 TGTGTATAAACTTGCAAAGGAAACACTAGTTTCT---AACATCAG--C-ATACCTAG-GC 451
Query 180 TGCTCAGAAGAAGACTTGTGGTAACTGCTTTGACGATGTTATCAAAGGTGAGAAGATGTT 239
||||||||||||||||||||||||| ||| |||||| ||||||||||||||| |||||
Sbjct 452 --CTCAGAAGAAGACTTGTGGTAACTGTTTTAACGATGGTATCAAAGGTGAGAACATGTT 509
Query 240 TTCCGTTGCTTTATGCCGTCATCAATTCTGTGTGGACTGCATGAAACAACATATAGAAGT 299
||||| || ||||||| ||||| | ||||||||||| |||||||| |||||||||||||
Sbjct 510 TTCCGCTGATTTATGCAGTCATTACTTCTGTGTGGAGTGCATGAAGGAACATATAGAAGT 569
Query 300 GAGTCTAAACGACGGAGGTGTACCAAGATGTCCTCATGATGGCTGCACATCAAACCTGAA 359
||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||
Sbjct 570 CAGTCTAAACGAGGGAGGTTTACCGAGATGTCCTCATGATGGCTGCACATCAAACCT-AA 628
Query 360 -TC-TA-ATAGCTTGT-ACCCATCTTTTGACACCTAAACAAAGAGAGATGTGG-AAACAA 414
|| || | ||| ||| | |||||||||||||||||||||||||||||||||| ||| ||
Sbjct 629 CTCTTAGA-AGC-TGTGA-CCATCTTTTGACACCTAAACAAAGAGAGATGTGGGAAA-AA 684
Query 415 AGGATCAAAGAGGAGTCAATTACTGTATATGACAGATTTCATTGCCCAAATCCAAGTTGC 474
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||
Sbjct 685 AGGATCAAAGAGGAGTCAATTCCTGTATGTGACAGATTTCATTGCCCAAATCCAAGGTGC 744
Query 475 TGGGCTTTGATGTCGAAAACCGAGCTCATTAAATCTACTGACGA---TGGAGTTAGGAGA 531
||||||||||||||||| || ||||||| | |||||||||| || |||||||||||||
Sbjct 745 TGGGCTTTGATGTCGAAGACGGAGCTCACTGAATCTACTGAAGAAGATGGAGTTAGGAGA 804
Query 532 CACTGCTTTAAATGCTGGAAACCCTTTTGCATTAATTGCAAAGTTCCGTGGCATAGTAAC 591
|||| ||||||| | |||| |||||| ||||| ||||||||||||||||||||||||
Sbjct 805 TGTTGCTATAAATGCCGCAAACACTTTTGTATTAACTGCAAAGTTCCGTGGCATAGTAAC 864
Query 592 TTGTCTTGCAAGGAATACAAAAGATCAGGTCAAAAGCCTACTACAACAGTGTGGC 646
||||| ||||||||| |||| || || |||| |||||| ||||||||||||||
Sbjct 865 TTGTCGTGCAAGGAACACAAGAGTTCCGGTCGTGAGCCTATTACAACAGTGTGGC 919
> AT3G45510.1 | Symbols: | RING/U-box protein | chr3:16690790-16691728
REVERSE LENGTH=774
Length=774
Score = 713 bits (386), Expect = 0.0
Identities = 574/662 (87%), Gaps = 24/662 (4%)
Strand=Plus/Plus
Query 1 ATGGGGAGATCTGTGCCTAAGGATGAGAAAATCGCCTTGCTAATGGATGATGTGCAACGC 60
|||| ||||||||||||| | |||||||| | ||||||||||||||||| || || |||
Sbjct 1 ATGGAGAGATCTGTGCCTCACCATGAGAAATTTGCCTTGCTAATGGATGACGTCCACCGC 60
Query 61 ATCAGACAACAATTTATATCTAGCATCCCTATTCTTGTGGCTA-GAAATCAAACTG-ATT 118
|||||||||||||||| || |||||||||||||||||| | | |||| ||| | | |||
Sbjct 61 ATCAGACAACAATTTACATTTAGCATCCCTATTCTTGTTAC-AGGAAAGCAAGC-GAATT 118
Query 119 TTGTC-CATAAACTTGCAAAGGAAACAATAGTTTCTCGCCTCATCAGACCTATGCCTCGT 177
|| | |||| ||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 119 TT-ACGTATAAGCTTGCAAAGGAAACACTAGTTTCTCGCAACATCAGACCTATGCCTCGT 177
Query 178 ACTGCTCAGAAGAAGACTTGTGGTAA-CTGCTTTGACGATGTTATCAAAGGTGAGAAGAT 236
||| ||||||||||||||||||| || ||||||| |||| |||| ||||| || ||||
Sbjct 178 ACTACTCAGAAGAAGACTTGTGG-AATTTGCTTTGTGGATGATATCGAAGGTCAGGAGAT 236
Query 237 GTTTTCCGTTGCTTTATGCCGTCATCAATTCTGTGTGGACTGCATGAAACAACATATAGA 296
|||||||| |||||||||| ||||| | ||||||||||| ||||||||||||| ||||||
Sbjct 237 GTTTTCCGCTGCTTTATGCAGTCATTACTTCTGTGTGGAGTGCATGAAACAACGTATAGA 296
Query 297 AGTGAGTCTAAACGACGGAGGTGTACCAAGATGTCCTCATGATGGCTGCACATCAAACCT 356
||||||||||||||| ||||||||||| |||||||| | | ||||||||| |||| |||
Sbjct 297 AGTGAGTCTAAACGAGGGAGGTGTACCTAGATGTCCGCGTCATGGCTGCAAATCAGCCCT 356
Query 357 GAA-TC-TA-ATAGCTTGT-ACCCATCTTTTGACACCTAAACAAAGAGAGATGTGGAAAC 412
|| || || | || |||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 357 -AACTCTTAGA-AG-TTGTGA-CCATCTTTTGACACCTAAACAAAGAGAGATGTGGGAAC 412
Query 413 AAAGGATCAAAGAGGAGTCAATTACTGTATATGACAGATTTCATTGCCCAAATCC-AAGT 471
||||||||||||||||||||||| |||||| | |||||||||||||||||||||| |||
Sbjct 413 AAAGGATCAAAGAGGAGTCAATTCCTGTATGTAACAGATTTCATTGCCCAAATCCAAAG- 471
Query 472 TGCTGGGCTTTGATGTCGAAAACCGAGCTCATTAAATCTACTGACGATGGAGTTAGGAGA 531
|||||||||||||||||||| |||||||| | | |||| |||||||||||||||||||||
Sbjct 472 TGCTGGGCTTTGATGTCGAAGACCGAGCTTACTGAATCCACTGACGATGGAGTTAGGAGA 531
Query 532 CACTGCTTTAAATGCTGGAAACCCTTTTGCATTAATTGCAAAGTTCCGTGGCATAGTAAC 591
|||| ||||||| | ||||||||||||||| | ||||| ||| ||||||||||||||
Sbjct 532 TGTTGCTCTAAATGCCGTAAACCCTTTTGCATTGACTGCAATGTTTCGTGGCATAGTAAC 591
Query 592 TTGTCTTGCAAGGAATACAAAAGATCA-GG-TCAA-AAGCCTACTACAACAGTGTGGCTA 648
|||||||||||||||||||| ||| | || | || ||| ||||||||||||||||||||
Sbjct 592 TTGTCTTGCAAGGAATACAA--GATGAAGGGT-AACAAGGCTACTACAACAGTGTGGCTA 648
Query 649 TA 650
||
Sbjct 649 TA 650
> AT3G43750.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger domain | chr3:15646460-15647566 FORWARD LENGTH=1041
Length=1041
Score = 294 bits (159), Expect = 6e-79
Identities = 498/654 (76%), Gaps = 53/654 (8%)
Strand=Plus/Plus
Query 1 ATGGGGAGATCTGTGCCTAAGGATGAGAAAATCGCCTTGCTAATGGATGATGTGCAACGC 60
||||||||||| ||| || | || || || ||| |||||||| ||||||||||||||
Sbjct 283 ATGGGGAGATCCACGCCGGAGCAAGATAACATTGCCATGCTAATGAATGATGTGCAACGC 342
Query 61 ATCAGACAACAATTTATATCTAG-CATCCCTATTCTTGTGGCTAGAAATCAAACTGA-TT 118
|| ||||||||||| | || ||| || |||||||| ||| ||||| |||||| | | |
Sbjct 343 ATGAGACAACAATTGAGATATAGTAAT-CCTATTCTGGTGACTAGAGATCAAA-TTAGCT 400
Query 119 TTGTC-CATAAACTTGCAAAGGAAACAATAGTTTCTCGCCTCATCAGACCTATGCCTCGT 177
||| | |||| ||||||| ||||||| ||||||| || ||||| | || | ||
Sbjct 401 TTG-CTTATAAGCTTGCAATGGAAACAGTAGTTTC-CG--AGATCAG--C-AT--AT-GT 450
Query 178 ACTGCTCAGAAGAAGACTTGTGGTAACTGCTTT-GACGATGTTATCAAAGGTGAGAAGAT 236
| ||| | | |||||| | | ||| ||| | ||||| | ||| |||||||||
Sbjct 451 A-TGC-C---TG-CGACTTGCAGCATCTG-TTTCAATAATGTTTTGGAAGCTGAGAAGAT 503
Query 237 GTTTTCCGTTGCTTTATGCCGTCATCAATTCTGTGTGGACTGCATGAAACAACATATAGA 296
|||||| |||||| ||||| ||||||||||||||||||| ||| ||||||| |||||||
Sbjct 504 GTTTTCTGTTGCTATATGCGGTCATCAATTCTGTGTGGAGTGCGTGAAACATTATATAGA 563
Query 297 AGTG-AGTCTAAACGACGGAGGTGTACCAAGATGTCCTCATGATGGCTGCACA-TCAAAC 354
|||| || ||| ||| ||||||||||| ||||||| | || || ||| | || ||
Sbjct 564 AGTGAAG-CTACTCGAGGGAGGTGTACCGAGATGTCTTGATTATCAATGC-GAGTCTAAG 621
Query 355 CTGAA-TC-TA-ATAGCTTGTACCCATCTTTTGACACCTAAAC-AAAGAGAGATGTGGAA 410
|| || || || | || |||| | ||||||| |||||||||| |||| | ||| |||||
Sbjct 622 CT-AACTCTTACA-AG-TTGTGGCAATCTTTTAACACCTAAACTAAAG-GCGATATGGAA 677
Query 411 ACAAAGGATCAAAGAGGAGTCAATTAC-TGTATATGACAGA-TTTCATTGCCCAAATCCA 468
||||||||| ||||||||| ||| | |||| || ||| ||| |||| ||||| ||
Sbjct 678 GCAAAGGATCGAAGAGGAGTTGATT-CTTGTAGCGGAGAGAGTTT-ATTGTCCAAACCCG 735
Query 469 AGTTGCT-GGGCTTTGATGTCGAAAACCGAGCTCAT-TAAATCTACT---GACGATG-GA 522
|| |||| ||| || |||||||||||||||||| | || ||| ||| || |||| |
Sbjct 736 AGGTGCTCGGG-ATTAATGTCGAAAACCGAGCTC-TCTACATCAACTGAAGAAGATGTAA 793
Query 523 GT--TAGGAGACACTGCT-TTAAATGCTGG-AAACCCTTTTGCATTAATTGCAAAGTTCC 578
|| ||||| || | |||||||| || ||||||||||||| || |||||||||||
Sbjct 794 GTACTAGGACTTGTTG-TGTTAAATGC-GGTGAACCCTTTTGCATCAACTGCAAAGTTCC 851
Query 579 GTGGCATAGTAACTTGTCTTGCAAGGAATACAAAAGATCAGGTCAAAAGCCTAC 632
|||||||||||||||||| ||| | || ||||| |||| |||| ||| |||||
Sbjct 852 GTGGCATAGTAACTTGTCATGCGATGATTACAAGAGATTGGGTCCAAATCCTAC 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31446576022
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5