BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897358
Length=330
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22250.2 | Symbols: ATAAT, AAT, MEE17 | aspartate aminotrans... 416 6e-116
> AT2G22250.2 | Symbols: ATAAT, AAT, MEE17 | aspartate aminotransferase
| chr2:9457810-9460412 REVERSE LENGTH=1744
Length=1744
Score = 416 bits (225), Expect = 6e-116
Identities = 248/259 (96%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 72 GGTGCTTTCGGGTGAAATATGTGAACACATTATTTATGCACCGGCAACACACACAAGCTT 131
||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 919 GGTGCTTTCGGATGAAATATATGAACACATTATTTATGCACCTGCAACACACACAAGCTT 978
Query 132 TGCTTCTTTGCCAGACATGTATGAAAGAACTTTGACAGTAAACGGTTTCTCAAAGGCTTT 191
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 TGCTTCTTTGCCTGACATGTATGAAAGAACTTTGACAGTAAACGGTTTCTCAAAGGCTTT 1038
Query 192 TGCAATGACGGGTTGGAGGCTTGGTTATCTTGCTGGTCCTAAACATATTGTGGCAGCTTG 251
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1039 CGCAATGACGGGTTGGAGGCTTGGATATCTTGCTGGTCCTAAACATATTGTGGCAGCTTG 1098
Query 252 CAGTAAATTACAAGGCCAGGTTACTTCAGGAGCTAGTAGCATTGCTCAGAAAGCGCATGT 311
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct 1099 CAGTAAATTACAAGGCCAGGTTAGTTCAGGAGCTAGTAGCATTGCTCAGAAAGC--AGGT 1156
Query 312 GTTGCTGCACTTGGGTTAG 330
|||||||| ||||||||||
Sbjct 1157 GTTGCTGCGCTTGGGTTAG 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15381931194
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5