BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897382
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45670.1 | Symbols: | Protein kinase superfamily protein | ... 1279 0.0
AT4G04632.1 | Symbols: | Protein kinase superfamily protein | ... 333 2e-90
> AT3G45670.1 | Symbols: | Protein kinase superfamily protein
| chr3:16765320-16766459 FORWARD LENGTH=1140
Length=1140
Score = 1279 bits (692), Expect = 0.0
Identities = 993/1138 (87%), Gaps = 22/1138 (2%)
Strand=Plus/Plus
Query 53 AGATTTCTGATTCATCGTCAAGCAACAACTCCATGATCCCTCCTCTTCCTCAAAACCCTA 112
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 17 AGATTTCTGATTCATCGTCAAGCAACAACTCGATGATCCCTCCTCTTCCTCAAAACCCTA 76
Query 113 TTTTCACTGTAAAACTCTCTCCGATCATGCTCCATCTACGTCGTTGTTCGAGGAAGATTA 172
|||| ||||| ||||||||||||||||| |||||| |||| ||||| |||| ||| ||||
Sbjct 77 TTTTGACTGTGAAACTCTCTCCGATCATTCTCCATGTACGACGTTGCTCGAAGAACATTA 136
Query 173 AAAAGAAGAAACTTACACAGCCGCTTTTgaagaagaagaagaagaagaagaGTATTAGTA 232
|||||||||||| ||||| | ||| ||| ||||||||||||||||||||||||||
Sbjct 137 AAAAGAAGAAACGTACACGGACGCCTTT------GAAGAAGAAGAAGAAGAGTATTAGTA 190
Query 233 GCAGTGTCAAATTTCTAAGCAGAGGATCATTCAACGCCGCCGT-TCAGAAACGTTCCACC 291
|||||||| ||| | ||| | ||| |||||||| ||||| | |||||||| |||||||
Sbjct 191 GCAGTGTCGAATCTATAATCGGAGTCTCATTCAAATCCGCC-TCTCAGAAACATTCCACC 249
Query 292 ACCGTAACCCGCAACGGAGGAGTGAGAAAGGTTTCCTCTTGGGTGAAATCTAGGTTACTT 351
|||||||| ||| |||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct 250 ACCGTAACTCGCGACGGAGGAGTTAAAAAGATTTCCTCTTGGGTGAAATCTAGGTTACTT 309
Query 352 GGGGAAGGGGGTTACGCTTCG-GTTTACCTAGCGACGAGTAAAGACGACAGATACAAAAC 410
|| ||||||| ||||| || | |||||||||||||| |||||||| |||| |||||||||
Sbjct 310 GGAGAAGGGGCTTACGGTT-GTGTTTACCTAGCGACAAGTAAAGATGACATATACAAAAC 368
Query 411 AGAGAGAGCCATCAAAAGTGCAGA-GCTTTCAAAGGCTTCGAGTCTTATGCACGAAGGAA 469
||||||||| ||||||||||| || | ||| |||||||| ||||||||||||||||||||
Sbjct 369 AGAGAGAGCGATCAAAAGTGCTGATG-TTTTAAAGGCTTGGAGTCTTATGCACGAAGGAA 427
Query 470 GGATCCTAA-AACGTTTACAATCTCCGTTCGTGATTAGTTGCTACGGCGATGAGATTGCA 528
||||| ||| || |||| |||||||||||||||||| |||| |||||| |||| ||||||
Sbjct 428 GGATCTTAAGAA-GTTTGCAATCTCCGTTCGTGATTCGTTGTTACGGCCATGAAATTGCA 486
Query 529 CGAGAAGGGACTGGTCATGAATATAACTTAG-TTCTCGAGTATTG-TGCTGGACAGTGTC 586
|||||||||||||||||| ||||||| || | |||||||||| || | ||||||||||||
Sbjct 487 CGAGAAGGGACTGGTCATCAATATAA-TTTGATTCTCGAGTACTGCT-CTGGACAGTGTC 544
Query 587 TTGTGGATTTGATCGAAGATAATCACGGAGGGTTGTCGGAGTTTGATGTGAAGCAGTTCT 646
||| |||| |||||||||||||||| |||||| | ||||||||||||| |||||||||
Sbjct 545 TTGCGGATATGATCGAAGATAATCAAGGAGGGATACCGGAGTTTGATGTCAAGCAGTTCG 604
Query 647 CTAGAGATGTTCTGTCTGGTCTCAGTTACATTCACAGCAGAAACATTGTTCATTGTGACA 706
||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
Sbjct 605 CTATAGATGTTCTGTCTGGTCTCAGTTACATTCACCGCAGAAACATTATTCATTGTGAAA 664
Query 707 TTAAACCAGACAATCTCTTACTCAGCCCTGTTGATCACCGGTTTAGGTTTAATGGGTATC 766
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 665 TTAAACCGGACAATCTCTTACTCAGCCCTGTTGATCACCGGTTTAGGTCTAATGGGTTTT 724
Query 767 TGATTAAA-ATTGCAGATTTTGGTTTATCAATGGAGAAAGGTTCGGTGGAGTATGGGAAT 825
||| ||| ||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 725 TGAC-AAAGATTGCAGATTTCGGTTTATCAATGGAGAAAGGTTCTAAAGAGTATGGAAAC 783
Query 826 GGATGTGGTCATATGAGAGGGACAACTAGGTACATGGCTCCGGAATTAATAGGCCATGGG 885
||| |||| || |||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 784 GGACGTGGGCACATGAGAGGGACAACTAGGTACATGGCTCCGGAGTTAATAGGCGGTGGG 843
Query 886 GTTGTTGATTTTGGTGTTGACATTTGGGCGTTTGGATGTTCTGTTTTGGAGATGCTAACC 945
|| | ||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 844 CTTCTGGATTTTGCTGTTGACATTTGCGCGTTTGGATGTTCTGTTTTGGAGATGCTAACC 903
Query 946 GGGCAAATGGTTTGGGGAGAGCATGGTGATTTGGTTTTTGATGATTGGGTTAAGCTCATC 1005
||| ||| |||||||||||| |||||||||||| | ||||||||||||| | | |||
Sbjct 904 GGGAAAAGGGTTTGGGGAGAATATGGTGATTTGGCTCATGATGATTGGGTTGATTTGATC 963
Query 1006 GGTCACACTGATCTCATTCCTCGTATATCGAGTCGGTTATCGGAAGAAGCTCAGGATTTT 1065
||||||| |||||||| ||||| || |||| ||||||||| | ||||||||| || |||
Sbjct 964 GGTCACAGTGATCTCACTCCTCAAATCTCGATTCGGTTATCTGCAGAAGCTCAAGACTTT 1023
Query 1066 TTGAGGAGATGCTTTG-TTAAGGAGCCTGGTTCAAGATGGAGGATCAATGAACTCATGAA 1124
||| ||| || |||| |||||||||||||||| || |||| ||| ||||||| || |
Sbjct 1024 CTGATGAGGTG-TTTGGTTAAGGAGCCTGGTTCGAGGTGGACCATCGGTGAACTCGTGGA 1082
Query 1125 CCATCCGTTTCTCTATTCGGATGTGGATTTTTCTCATAACGGTTTTGTTTATGACTGA 1182
|||||||||||||| ||| |||| || |||||||| || || ||||||||||| |||
Sbjct 1083 CCATCCGTTTCTCTGTTCAGATGAAGAGTTTTCTCACAATGGATTTGTTTATGATTGA 1140
> AT4G04632.1 | Symbols: | Protein kinase superfamily protein
| chr4:2339586-2340049 REVERSE LENGTH=464
Length=464
Score = 333 bits (180), Expect = 2e-90
Identities = 277/325 (85%), Gaps = 2/325 (1%)
Strand=Plus/Plus
Query 859 ATGGCTCCGGAATTAATAGGCCATGGGGTTGTTGATTTTGGTGTTGACATTTGGGCGTTT 918
||||||||||| ||||||||| |||| |||| ||||||| |||||||||||||||||||
Sbjct 1 ATGGCTCCGGAGTTAATAGGCGGTGGGCTTGTGGATTTTGCTGTTGACATTTGGGCGTTT 60
Query 919 GGATGTTCTGTTTTGGAGATGCTAACCGGGCAAATGGTTTGGGGAGAGCATGGTGATTTG 978
|||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||
Sbjct 61 GGATGTTCTGTTTTGGAGATGCTAACAGGGAAAACGGTTTGGGGAGAGCATGGTGATTTG 120
Query 979 GTTTTTGATGATTGGGTTAAGCTCATCGGTCACACTGATCTCATTCCTCGTATATCGAGT 1038
||| ||||||||||||| | | || ||||| | |||||||| ||||| || |||| |
Sbjct 121 GTTCATGATGATTGGGTTGATTTAATTGGTCATAGTGATCTCACTCCTCAAATCTCGACT 180
Query 1039 CGGTTATCGGAAGAAGCTCAGGATTTTTTGAGGAGATGCTTTG-TTAAGGAGCCTGGTTC 1097
|||||||| | ||||||||| || ||| | | ||| || |||| ||||||||||||||||
Sbjct 181 CGGTTATCTGCAGAAGCTCAAGACTTTCTAATGAGGTG-TTTGGTTAAGGAGCCTGGTTC 239
Query 1098 AAGATGGAGGATCAATGAACTCATGAACCATCCGTTTCTCTATTCGGATGTGGATTTTTC 1157
|| ||||| ||| ||||||| || |||||| |||||| | ||||||||| || |||||
Sbjct 240 GAGGTGGAGCATCGGTGAACTCGTGGACCATCTGTTTCTTTGTTCGGATGTAGAGTTTTC 299
Query 1158 TCATAACGGTTTTGTTTATGACTGA 1182
||| || |||||||||||||| |||
Sbjct 300 TCACAATGGTTTTGTTTATGATTGA 324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5