BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897399
Length=570
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45910.1 | Symbols: | unknown protein; Has 3 Blast hits to ... 529 1e-149
> AT3G45910.1 | Symbols: | unknown protein; Has 3 Blast hits to
3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:16876338-16877075 REVERSE LENGTH=603
Length=603
Score = 529 bits (286), Expect = 1e-149
Identities = 454/532 (85%), Gaps = 24/532 (5%)
Strand=Plus/Plus
Query 49 CTGAAGAATTCTGCAGTCTGC-CAACTTTTTTATCATGGGAGAATCTT-GCTCGAGGTTT 106
|||||||| || ||||||| | |||| ||||| ||||||||||||||| | | | ||||
Sbjct 68 CTGAAGAAATCCGCAGTCT-CACAACCTTTTTGTCATGGGAGAATCTTGGGAC-ATGTTT 125
Query 107 ACTCCTTGATCGAAA--CGCACGTTGGATCTCTATGCTGTAGCCACCGCCGAGATCTTAC 164
||| ||||||| ||| ||||||| |||||||||||||| ||||||||||||| || | |
Sbjct 126 ACTTCTTGATCCAAACGCGCACGTAGGATCTCTATGCTGCAGCCACCGCCGAG-TCCTCC 184
Query 165 TTGTCCCATTGATCATCTTCGTCCA-C-GACATATC-T-ACG--T-TTATACTTTCGATC 217
| || | | || | || | | | || | || | | | || | ||||||||
Sbjct 185 TCGT-CGA-AGA--GTTTTTG-GGATCTTACTTGTCTTGGGGTATCTTGGA-TTTCGATC 238
Query 218 TCTTTGTCCAATCCAAGGCACTTGATGGAGGAGCCATCGATATGCTTCGAAGATCCGGTG 277
|||| ||||||||||| |||||| ||||||||| |||||||||||||||||||| |||||
Sbjct 239 TCTTCGTCCAATCCAATGCACTTAATGGAGGAGTCATCGATATGCTTCGAAGATTCGGTG 298
Query 278 TTGAGGTTCATATCTCACAACCGCCTACGAAGACCAACAAGAGATCCAATGCAAACCACA 337
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 299 TTGAGGTTCATATCTCACAACCGCCTACGAAGACCAAGAAGAGATCCAATGCAAACCGCA 358
Query 338 AAGGTTTTCCCGATTTTGAATTGGGGAAGGCTATGCACTCATGGGCATTGGAGCGTAATC 397
|||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 359 AAGGTTTTCCCGATATTGAATTGGGGAAGGCTATGCATTCAAGGGCATTGGAGCGTAATC 418
Query 398 CAAGCCCAATGCTCCTAATCTCCTCAGATTATCGTCTTCGCACCGACGTCTCACACATCA 457
||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| ||||
Sbjct 419 CAAGCCCAATGCTCCTAATTTCCTCAGATTCTCGTCTTCACACCGACGTCTCACATATCA 478
Query 458 AAAGTCTCAGG-TTTGAGATAATCTTATTTCACACCAAAAAGGCTCCCAAAGATCTCAAG 516
|||||| | |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 479 CGAGTCTC-GCATTTGAGATAATCTTGTTTCACACCAAAAAGGCTCCCAAAGATCTCAAG 537
Query 517 GACTTATGTA-CAAAATATGCACTATGGTTTAATGGTGTGGCAGAACTGACT 567
|| ||| | | ||||| || |||||||||| |||||||| || ||||||||
Sbjct 538 GATTTA-GCAACAAAACGTGTACTATGGTTTGATGGTGTGTCAAAACTGACT 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27377610115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5