BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897420
Length=372
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46100.1 | Symbols: ATHRS1, HRS1 | Histidyl-tRNA synthetase ... 364 2e-100
AT5G03406.1 | Symbols: | Class II aaRS and biotin synthetases ... 259 1e-68
> AT3G46100.1 | Symbols: ATHRS1, HRS1 | Histidyl-tRNA synthetase
1 | chr3:16928294-16931033 REVERSE LENGTH=1660
Length=1660
Score = 364 bits (197), Expect = 2e-100
Identities = 247/269 (92%), Gaps = 11/269 (4%)
Strand=Plus/Plus
Query 18 GCGATTGAGCTCGAGCTTTAGGCCTATTCTTCTTCTTGACTTCGTTGT-TTCTTGTTCGC 76
||||||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||
Sbjct 76 GCGATTGAGCTCGAGCTTTAGACCTATTCTTCTTCTTGACTTGGTT-TCTTCTTGTTCGC 134
Query 77 CTCCTCGTCGCCAGTTCTCTATTCCTAGGCGCCTAATCTGTGCCGCCGCCAATGGAGGAG 136
|| | | ||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 135 CT-C-C-TCGACAGTTCTCTATCCCTAGGCGCCTAATCTGTGCCGCCGCCAATGGAGGAG 191
Query 137 GCAGGTCAGGTTCGATTGTGGCGGCTCCGTTGGTTGTGACTGAAGAAGACTTTCAGAAGA 196
||||||||||||| ||||| || ||| ||||| | ||||||||||||||||| ||||
Sbjct 192 GCAGGTCAGGTTCCATTGTTGC---TCCTTTGGT-G--ACTGAAGAAGACTTTCACAAGA 245
Query 197 AGATCGATGTCAATCCTCCTAAAGGAACTCGTGATTTCCCTCCTGAGGATATGCGACTCC 256
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 246 AGATCGATGTCAATCCTCCTAAAGGAACTCGTGATTTTCCTCCTGAGGATATGCGTCTCC 305
Query 257 GCAATTGGCTCTTCAACCACTTCAAAGAG 285
||||||||||||| |||||||||||||||
Sbjct 306 GCAATTGGCTCTTTAACCACTTCAAAGAG 334
> AT5G03406.1 | Symbols: | Class II aaRS and biotin synthetases
superfamily protein | chr5:839885-841875 FORWARD LENGTH=1304
Length=1304
Score = 259 bits (140), Expect = 1e-68
Identities = 236/277 (85%), Gaps = 27/277 (10%)
Strand=Plus/Plus
Query 18 GCGATTGAGCTCGAGC--T-TTAGGCCTATTCTTCTTCTTGACTTCGTTGTTTCTTGTTC 74
|||||||||||| ||| | ||||||| | |||||||||||||| |||||||||||
Sbjct 108 GCGATTGAGCTCCAGCTTTATTAGGCC---TGTTCTTCTTGACTTC---GTTTCTTGTTC 161
Query 75 GCCTCCTCGTCGCCAGTTCTCTATTCCTAGGCGCCTAATCTGTGCCGC---C---GCCAA 128
|||| || ||||||||||||| ||||||||| | ||||||||||| | | |||
Sbjct 162 GCCT-CT--ACGCCAGTTCTCTACCCCTAGGCGCTTTATCTGTGCCGCGAGCAAGGTCAA 218
Query 129 TGGAGGAGGCAGGTCAGGTTCGATTGTGGCGGCTCCGTTGGTTGTGACTGAAGAAGACTT 188
||||||||||||||||||||||||||| ||||| ||||| |||| ||||| | | ||
Sbjct 219 TGGAGGAGGCAGGTCAGGTTCGATTGT---TGCTCCATTGGTAGTGAATGAAG-A-A-TT 272
Query 189 TCAGAAGAAGATCGATGTCAATCCTCCTAAAGGAACTCGTGATTTCCCTCCTGAGGATAT 248
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TC---AGAACATCGATGTCAATCCTCCTAAAGGAACTCGTGATTTCCCTCCTGAGGATAT 329
Query 249 GCGACTCCGCAATTGGCTCTTCAACCACTTCAAAGAG 285
|||||||||||| ||||||||||||||||||||||||
Sbjct 330 GCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAG 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17493176652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5