BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897421

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44717.1 | Symbols:  | Pseudogene of AT5G03495; nucleotide b...   246    1e-64
  AT5G03480.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   102    3e-21


> AT3G44717.1 | Symbols:  | Pseudogene of AT5G03495; nucleotide 
binding protein | chr3:16264449-16264931 REVERSE LENGTH=483
Length=483

 Score =  246 bits (133),  Expect = 1e-64
 Identities = 305/382 (80%), Gaps = 35/382 (9%)
 Strand=Plus/Plus

Query  105  AGACTATG-AAAGTGGTACCCTCAAGAGAGTTGCCTTCATGAGGATTGAAGGAGAAAA--  161
            ||||| || |||| |||||| ||||||| ||| ||||||||||||||| ||| |||||  
Sbjct  128  AGACTTTGAAAAG-GGTACCATCAAGAGTGTTTCCTTCATGAGGATTG-AGG-GAAAAGG  184

Query  162  TGC-CAATGAGAAAGCATTGGAACTTAGTGGAACTGACGTGGGAGGATGGACTGCAATCG  220
            |||  || |||||||||||||||||||||||||||| |     |  ||   | |   |  
Sbjct  185  TGCTGAA-GAGAAAGCATTGGAACTTAGTGGAACTG-C-----A--AT---C-G---T--  226

Query  221  TTAAGGCTGCACCATGGCAGAAAGAAGTCATGGATCCTTGGT-GTCCTGCTTCTGCTGCT  279
            | ||| |||||||||| |||||||||  |||||||| ||  | | | |||| || ||  |
Sbjct  227  TAAAG-CTGCACCATGACAGAAAGAAACCATGGATCATTCATTGACGTGCTGCT-CT--T  282

Query  280  GCTGCCAG--GC-CCAAAGAACACTGTGTAAATGTTACTGGATATGACACTTCT-CTTCC  335
            ||||  ||  |  ||||||||||  |  |||| ||||||||||||||||||| | |||||
Sbjct  283  GCTGAGAGAAGAACCAAAGAACAAAGCCTAAACGTTACTGGATATGACACTT-TGCTTCC  341

Query  336  TGAGATTGATATCGAGATGGCTGTGTGTGAATTTCTCTCTTCATGTGGAGAGGTCGCCCG  395
            || |||||||||||||||||| |||||| ||| ||||||||||| |||||||||| | ||
Sbjct  342  TGTGATTGATATCGAGATGGCGGTGTGTAAATATCTCTCTTCATATGGAGAGGTCACGCG  401

Query  396  AATTATGGTTCTCCCTAGCTGTGCTTGTGTTTCTCTTGTAGGAGAAGGATGTGTAGACAA  455
            | | |||||||||||||||| |||| | |||||| || ||||||||||||||||| | ||
Sbjct  402  AGTAATGGTTCTCCCTAGCTATGCTCGCGTTTCTATTATAGGAGAAGGATGTGTAAAGAA  461

Query  456  GGCGCTACGACTAAGTGGATGT  477
            ||| |||  |||||||||||||
Sbjct  462  GGCACTAAAACTAAGTGGATGT  483


> AT5G03480.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:869208-870855 REVERSE LENGTH=966
Length=966

 Score =  102 bits (55),  Expect = 3e-21
 Identities = 90/106 (85%), Gaps = 6/106 (6%)
 Strand=Plus/Plus

Query  123  CCTCAAGAGAGT-TGCCTTCATGAGGATTGAA-GGAGAAAATGCC-AATGAGAAAGCATT  179
            ||||||||| || | |||||||| ||| | || ||||||  |||| || || || |||||
Sbjct  201  CCTCAAGAGTGTCT-CCTTCATGTGGA-TCAAGGGAGAAGGTGCCGAA-GACAAGGCATT  257

Query  180  GGAACTTAGTGGAACTGACGTGGGAGGATGGACTGCAATCGTTAAG  225
            | |||||||||||||||||||||||||||||||||  |||||||||
Sbjct  258  GCAACTTAGTGGAACTGACGTGGGAGGATGGACTGTTATCGTTAAG  303



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26624097910


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5