BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897427

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G46160.1 | Symbols:  | Protein kinase superfamily protein | ...   279    6e-75
  AT2G18530.1 | Symbols:  | Protein kinase superfamily protein | ...   252    1e-66


> AT3G46160.1 | Symbols:  | Protein kinase superfamily protein 
| chr3:16950955-16952136 FORWARD LENGTH=1182
Length=1182

 Score =  279 bits (151),  Expect = 6e-75
 Identities = 185/202 (92%), Gaps = 0/202 (0%)
 Strand=Plus/Plus

Query  34   GAGAAGGACGAGAAGAATCCTTTACTCGAGAAGATTTACTACAACACGTTACACGAGTAC  93
            |||||||||| |||| |||| |||||||||||||| || |||||||||||||| ||||||
Sbjct  388  GAGAAGGACGGGAAGGATCCATTACTCGAGAAGATGTATTACAACACGTTACAAGAGTAC  447

Query  94   TGTTCAGGAAGAAACCTAGCGAAACACATTGAAAGAAACAGAGGAAAATTACCGGAAGAT  153
             | ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct  448  AGCTCAGGAAGAAACCTAGCGACACACATTGAAAAAAACAGAGGAAAATTACCGGAAGAT  507

Query  154  GATGTGAAGAGTTTCGCTAGTGAGATATTGGTTGGTCTCAAGTATCTTCATGAAGAGAAG  213
            ||||||| |||| |||||| |||||||||| |||||||||||||| ||||||||||||||
Sbjct  508  GATGTGAGGAGTCTCGCTAATGAGATATTGCTTGGTCTCAAGTATATTCATGAAGAGAAG  567

Query  214  ATCATTCACTGTGATATCAAAC  235
            |||||||| ||||| |||||||
Sbjct  568  ATCATTCATTGTGACATCAAAC  589


> AT2G18530.1 | Symbols:  | Protein kinase superfamily protein 
| chr2:8039670-8040780 FORWARD LENGTH=642
Length=642

 Score =  252 bits (136),  Expect = 1e-66
 Identities = 154/163 (94%), Gaps = 0/163 (0%)
 Strand=Plus/Plus

Query  73   TACAACACGTTACACGAGTACTGTTCAGGAAGAAACCTAGCGAAACACATTGAAAGAAAC  132
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  76   TACAACACGTTACAAGAGTACTGTTCAGGAAGAAACCTAGCGAAACACATTGAAAGAAAC  135

Query  133  AGAGGAAAATTACCGGAAGATGATGTGAAGAGTTTCGCTAGTGAGATATTGGTTGGTCTC  192
             |||||||||||||| |||||||||||| ||||||||||| |||||||||| ||||||||
Sbjct  136  GGAGGAAAATTACCGAAAGATGATGTGAGGAGTTTCGCTAATGAGATATTGCTTGGTCTC  195

Query  193  AAGTATCTTCATGAAGAGAAGATCATTCACTGTGATATCAAAC  235
            |||||| |||||||||||||||||||||| ||||| |||||||
Sbjct  196  AAGTATATTCATGAAGAGAAGATCATTCATTGTGACATCAAAC  238



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11310243525


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5