BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897428
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46160.1 | Symbols: | Protein kinase superfamily protein | ... 556 1e-157
AT2G18530.1 | Symbols: | Protein kinase superfamily protein | ... 119 6e-26
> AT3G46160.1 | Symbols: | Protein kinase superfamily protein
| chr3:16950955-16952136 FORWARD LENGTH=1182
Length=1182
Score = 556 bits (301), Expect = 1e-157
Identities = 816/1050 (78%), Gaps = 93/1050 (9%)
Strand=Plus/Plus
Query 16 TCTTCTGATCGATTAGGTCAATGGGAGGACGACAACTCGAACCGTCCTCACAAGAAGTTT 75
|||||||||||||||| || | | | ||||||| |||| ||||||||||||||||||||
Sbjct 16 TCTTCTGATCGATTAGTTC-A-GTG-GGACGACGACTCTAACCGTCCTCACAAGAAGTTG 72
Query 76 AAGTATTC-ACGAACCAGATCAGAGACGAACGTGATAGACGATGATGCAGATTC-T-T-- 130
||| |||| || ||| | |||||||||| |||||||| |||||||| ||||| | |
Sbjct 73 AAGCATTCAAC-AACGATTTCAGAGACGAGTGTGATAGAGGATGATGCTGATTCGTCTAC 131
Query 131 -C-GA---ACCGTTCAATCACAAGAAAGCCAGAAAGTGATTC-GTGGGTGGTGACTCGTT 184
| || || ||| |||| || | ||| |||| || || |||||| || |||||||
Sbjct 132 CCAGATGGGCCATTCGATCAAAACCATTCCAAAAAGCGA-TCGGTGGGTCGTAACTCGTT 190
Query 185 ATCTTGGAAACGTCTCTGGCTCATACGGCTCTGTTTACGTAGCCGTCAGAACAACCGACG 244
|||||||||| |||| ||| | | ||||||||| |||||| || || | ||| |
Sbjct 191 ATCTTGGAAA---CTCT---TCACGCAGTTCTGTTTACTTAGCCGAGAGCACGATCGAAG 244
Query 245 GAGACGAAGACGATCTTCCTTACGAGATGGTCATCAAATCTAGTCAGCTCTCAGAAGCAG 304
|||| |||||| |||||||| |||||||| ||| ||||||| | || ||||| |||| |
Sbjct 245 GAGAGGAAGACTATCTTCCTGACGAGATGACCATTAAATCTATTGAGATCTCACAAGC-G 303
Query 305 -CATATCTTATGAACGAGGAAAA-TTACTTAACACGTCT-CAAAAGCCCGTTTATCGTCT 361
|| |||||||||||| ||||| || | || | ||||| ||||| ||| ||| | || |
Sbjct 304 TCACGTCTTATGAACGAAGAAAAGTTTC-TATCCCGTCTCCAAAA-CCCTTTTGTTGTGT 361
Query 362 CCTGT-TACGGCCATGA-G--A-T-GACAG-AGGA---GAA-GAACGA-GA----AGAAG 405
|| | |||||||| || | | | | || |||| ||| || | | | |||||
Sbjct 362 -CTTTCTACGGCCACGAGGTCACTATAGAGAAGGACGGGAAGGATCCATTACTCGAGAAG 420
Query 406 AAGTACTT-CAACACTATT-CACGAGTACTGTC-CTGGTCA-AAGCCTTGCGAAACAC-G 460
| ||| || |||||| || || |||||| | | | || | || ||| |||| ||||
Sbjct 421 ATGTA-TTACAACAC-GTTACAAGAGTACAG-CTCAGG-AAGAAACCTAGCGACACACAT 476
Query 461 T-CAAAAGACATGAAGGAGGATTACCAGTTGTTGATGTGAAGAGAT-ACGCTAGTGATAT 518
| |||| ||| | |||| |||||| | | |||||||| ||| | ||||| ||| ||
Sbjct 477 TGAAAAAAACA-G-AGGAAAATTACCGGAAGATGATGTGAGGAG-TCTCGCTAATGAGAT 533
Query 519 CTTGTTTGGTCTCAAGTGTATACATGAAGATG-AGATCATTCATCGCGACATCAAACCAA 577
||| |||||||||||| ||| |||||||| | ||||||||||| | |||||||||||||
Sbjct 534 ATTGCTTGGTCTCAAGTATATTCATGAAGA-GAAGATCATTCATTGTGACATCAAACCAA 592
Query 578 AAAACAT-ATTAC-TCACGCCTAGCG-GTTGTGGGTTTAAGGCTAAGATCTCTGGTCTTG 634
| || || | ||| || || | | | | ||| ||| ||||| ||||| |||
Sbjct 593 AGAATATCA-TACTTC-CG-TTTGAGAATAACCTATTT---GCTCAGATCGCTGGTTTTG 646
Query 635 GAAACGCGATTGAGAAATGGT-GGATTGAGGATGGTGGAA-G-CT-GGAATCATAGGAGT 690
|||| ||||| ||||||||| || ||||| ||||| ||| | | || |||||||| |
Sbjct 647 GAAAAGCGATAAAGAAATGGTCGG-TTGAGTATGGT-GAAGGATTAGG--TCATAGGA-T 701
Query 691 -GGCACTG-CAAGGTTTA-TGTCACCGGAGCTTAT-AAGGAATATGGTTTTGGATTATGG 746
||||| | | | | ||| || | |||||| |||| | || | |||||||||||||||||
Sbjct 702 AGGCAC-GTC-ACGATTATTGCCCCCGGAGGTTATGATGG-ACATGGTTTTGGATTATGG 758
Query 747 TGCGGATGTGTGGGCTTTTGGGTGTACCGTGCTTGAGATGTTGACTGGAGAACGATTTTT 806
||| ||||||||||||||||| |||||||||||||||||||||||||||||| || |||
Sbjct 759 TGCTGATGTGTGGGCTTTTGGCTGTACCGTGCTTGAGATGTTGACTGGAGAAAGAGTTTG 818
Query 807 GAGTGAGTTTGGTAAGCTTGATTGGGAAGGTTGGGAA-ACTCTCATTGGTAAAAGTGGAA 865
|||||||||||||||||||||||||||||| ||| || || ||||||||| ||||||| |
Sbjct 819 GAGTGAGTTTGGTAAGCTTGATTGGGAAGGCTGG-AAGACCCTCATTGGTGAAAGTGGTA 877
Query 866 TTGTTCCCTATATCCCTGATTACTTGTCTGATAAGGCAAAGGATTTTCTCACAAAGTGTT 925
||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 878 GCGTTCCCTATATTCCTAATTACTTGTCTGATAAGGCAAAGGATTTTCTTGCAAAGTGTT 937
Query 926 TGGAGAGAGACCCATCTAAAAGGTGGTCTGTTGATAGTTTGATCAAACATGAGTTC-TTG 984
|||||||||| |||||||| |||||||| |||||||||||| || ||||||||||| ||
Sbjct 938 TGGAGAGAGATCCATCTAAGAGGTGGTCAGTTGATAGTTTGCTCGAACATGAGTTCCTTA 997
Query 985 AATG-AC-gaagaag-cggaagaagaagaa 1011
|||| | || |||| || |||||||||||
Sbjct 998 AATGGATTGACGAAGACG-AAGAAGAAGAA 1026
> AT2G18530.1 | Symbols: | Protein kinase superfamily protein
| chr2:8039670-8040780 FORWARD LENGTH=642
Length=642
Score = 119 bits (64), Expect = 6e-26
Identities = 99/115 (86%), Gaps = 6/115 (5%)
Strand=Plus/Plus
Query 900 GGCAAAGGATTTTCTCACAAAGTGTTTGGAGAGAGACCCAT-CTAAAAGGTGGTCTGTTG 958
||||||||| ||||||||||||||||||||||||||||| | |||| ||||||| |||||
Sbjct 475 GGCAAAGGA-TTTCTCACAAAGTGTTTGGAGAGAGACCC-TGCTAAGAGGTGGTGTGTTG 532
Query 959 ATAGTTTGATCAAACATGAGTTC-TTGAATG-AC-gaagaagcggaagaagaaga 1010
|| ||||| ||||||||| |||| || |||| | || |||| ||| ||||||||
Sbjct 533 ATTGTTTGCTCAAACATGGGTTCCTTAAATGGATTGACGAAGAGGAGGAAGAAGA 587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5