BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg897428 Length=1071 Score E Sequences producing significant alignments: (Bits) Value AT3G46160.1 | Symbols: | Protein kinase superfamily protein | ... 556 1e-157 AT2G18530.1 | Symbols: | Protein kinase superfamily protein | ... 119 6e-26 > AT3G46160.1 | Symbols: | Protein kinase superfamily protein | chr3:16950955-16952136 FORWARD LENGTH=1182 Length=1182 Score = 556 bits (301), Expect = 1e-157 Identities = 816/1050 (78%), Gaps = 93/1050 (9%) Strand=Plus/Plus Query 16 TCTTCTGATCGATTAGGTCAATGGGAGGACGACAACTCGAACCGTCCTCACAAGAAGTTT 75 |||||||||||||||| || | | | ||||||| |||| |||||||||||||||||||| Sbjct 16 TCTTCTGATCGATTAGTTC-A-GTG-GGACGACGACTCTAACCGTCCTCACAAGAAGTTG 72 Query 76 AAGTATTC-ACGAACCAGATCAGAGACGAACGTGATAGACGATGATGCAGATTC-T-T-- 130 ||| |||| || ||| | |||||||||| |||||||| |||||||| ||||| | | Sbjct 73 AAGCATTCAAC-AACGATTTCAGAGACGAGTGTGATAGAGGATGATGCTGATTCGTCTAC 131 Query 131 -C-GA---ACCGTTCAATCACAAGAAAGCCAGAAAGTGATTC-GTGGGTGGTGACTCGTT 184 | || || ||| |||| || | ||| |||| || || |||||| || ||||||| Sbjct 132 CCAGATGGGCCATTCGATCAAAACCATTCCAAAAAGCGA-TCGGTGGGTCGTAACTCGTT 190 Query 185 ATCTTGGAAACGTCTCTGGCTCATACGGCTCTGTTTACGTAGCCGTCAGAACAACCGACG 244 |||||||||| |||| ||| | | ||||||||| |||||| || || | ||| | Sbjct 191 ATCTTGGAAA---CTCT---TCACGCAGTTCTGTTTACTTAGCCGAGAGCACGATCGAAG 244 Query 245 GAGACGAAGACGATCTTCCTTACGAGATGGTCATCAAATCTAGTCAGCTCTCAGAAGCAG 304 |||| |||||| |||||||| |||||||| ||| ||||||| | || ||||| |||| | Sbjct 245 GAGAGGAAGACTATCTTCCTGACGAGATGACCATTAAATCTATTGAGATCTCACAAGC-G 303 Query 305 -CATATCTTATGAACGAGGAAAA-TTACTTAACACGTCT-CAAAAGCCCGTTTATCGTCT 361 || |||||||||||| ||||| || | || | ||||| ||||| ||| ||| | || | Sbjct 304 TCACGTCTTATGAACGAAGAAAAGTTTC-TATCCCGTCTCCAAAA-CCCTTTTGTTGTGT 361 Query 362 CCTGT-TACGGCCATGA-G--A-T-GACAG-AGGA---GAA-GAACGA-GA----AGAAG 405 || | |||||||| || | | | | || |||| ||| || | | | ||||| Sbjct 362 -CTTTCTACGGCCACGAGGTCACTATAGAGAAGGACGGGAAGGATCCATTACTCGAGAAG 420 Query 406 AAGTACTT-CAACACTATT-CACGAGTACTGTC-CTGGTCA-AAGCCTTGCGAAACAC-G 460 | ||| || |||||| || || |||||| | | | || | || ||| |||| |||| Sbjct 421 ATGTA-TTACAACAC-GTTACAAGAGTACAG-CTCAGG-AAGAAACCTAGCGACACACAT 476 Query 461 T-CAAAAGACATGAAGGAGGATTACCAGTTGTTGATGTGAAGAGAT-ACGCTAGTGATAT 518 | |||| ||| | |||| |||||| | | |||||||| ||| | ||||| ||| || Sbjct 477 TGAAAAAAACA-G-AGGAAAATTACCGGAAGATGATGTGAGGAG-TCTCGCTAATGAGAT 533 Query 519 CTTGTTTGGTCTCAAGTGTATACATGAAGATG-AGATCATTCATCGCGACATCAAACCAA 577 ||| |||||||||||| ||| |||||||| | ||||||||||| | ||||||||||||| Sbjct 534 ATTGCTTGGTCTCAAGTATATTCATGAAGA-GAAGATCATTCATTGTGACATCAAACCAA 592 Query 578 AAAACAT-ATTAC-TCACGCCTAGCG-GTTGTGGGTTTAAGGCTAAGATCTCTGGTCTTG 634 | || || | ||| || || | | | | ||| ||| ||||| ||||| ||| Sbjct 593 AGAATATCA-TACTTC-CG-TTTGAGAATAACCTATTT---GCTCAGATCGCTGGTTTTG 646 Query 635 GAAACGCGATTGAGAAATGGT-GGATTGAGGATGGTGGAA-G-CT-GGAATCATAGGAGT 690 |||| ||||| ||||||||| || ||||| ||||| ||| | | || |||||||| | Sbjct 647 GAAAAGCGATAAAGAAATGGTCGG-TTGAGTATGGT-GAAGGATTAGG--TCATAGGA-T 701 Query 691 -GGCACTG-CAAGGTTTA-TGTCACCGGAGCTTAT-AAGGAATATGGTTTTGGATTATGG 746 ||||| | | | | ||| || | |||||| |||| | || | ||||||||||||||||| Sbjct 702 AGGCAC-GTC-ACGATTATTGCCCCCGGAGGTTATGATGG-ACATGGTTTTGGATTATGG 758 Query 747 TGCGGATGTGTGGGCTTTTGGGTGTACCGTGCTTGAGATGTTGACTGGAGAACGATTTTT 806 ||| ||||||||||||||||| |||||||||||||||||||||||||||||| || ||| Sbjct 759 TGCTGATGTGTGGGCTTTTGGCTGTACCGTGCTTGAGATGTTGACTGGAGAAAGAGTTTG 818 Query 807 GAGTGAGTTTGGTAAGCTTGATTGGGAAGGTTGGGAA-ACTCTCATTGGTAAAAGTGGAA 865 |||||||||||||||||||||||||||||| ||| || || ||||||||| ||||||| | Sbjct 819 GAGTGAGTTTGGTAAGCTTGATTGGGAAGGCTGG-AAGACCCTCATTGGTGAAAGTGGTA 877 Query 866 TTGTTCCCTATATCCCTGATTACTTGTCTGATAAGGCAAAGGATTTTCTCACAAAGTGTT 925 ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 878 GCGTTCCCTATATTCCTAATTACTTGTCTGATAAGGCAAAGGATTTTCTTGCAAAGTGTT 937 Query 926 TGGAGAGAGACCCATCTAAAAGGTGGTCTGTTGATAGTTTGATCAAACATGAGTTC-TTG 984 |||||||||| |||||||| |||||||| |||||||||||| || ||||||||||| || Sbjct 938 TGGAGAGAGATCCATCTAAGAGGTGGTCAGTTGATAGTTTGCTCGAACATGAGTTCCTTA 997 Query 985 AATG-AC-gaagaag-cggaagaagaagaa 1011 |||| | || |||| || ||||||||||| Sbjct 998 AATGGATTGACGAAGACG-AAGAAGAAGAA 1026 > AT2G18530.1 | Symbols: | Protein kinase superfamily protein | chr2:8039670-8040780 FORWARD LENGTH=642 Length=642 Score = 119 bits (64), Expect = 6e-26 Identities = 99/115 (86%), Gaps = 6/115 (5%) Strand=Plus/Plus Query 900 GGCAAAGGATTTTCTCACAAAGTGTTTGGAGAGAGACCCAT-CTAAAAGGTGGTCTGTTG 958 ||||||||| ||||||||||||||||||||||||||||| | |||| ||||||| ||||| Sbjct 475 GGCAAAGGA-TTTCTCACAAAGTGTTTGGAGAGAGACCC-TGCTAAGAGGTGGTGTGTTG 532 Query 959 ATAGTTTGATCAAACATGAGTTC-TTGAATG-AC-gaagaagcggaagaagaaga 1010 || ||||| ||||||||| |||| || |||| | || |||| ||| |||||||| Sbjct 533 ATTGTTTGCTCAAACATGGGTTCCTTAAATGGATTGACGAAGAGGAGGAAGAAGA 587 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52459569525 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5