BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897438
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07210.1 | Symbols: ARR21, RR21 | response regulator 21 | ch... 712 0.0
AT2G27070.1 | Symbols: ARR13, RR13 | response regulator 13 | ch... 595 1e-169
> AT5G07210.1 | Symbols: ARR21, RR21 | response regulator 21 |
chr5:2252237-2256018 FORWARD LENGTH=1866
Length=1866
Score = 712 bits (385), Expect = 0.0
Identities = 481/528 (91%), Gaps = 4/528 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTTTGCTCAATCTTTCTACAACCAAAGCTCTGTCTTCAGAATCAATGTCATGGTT 60
||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1 ATGGCTTCTGCTCAATCTTTCTACAACCAAAGCTCTGTCTTGAAAATCAATGTCATGGTT 60
Query 61 GTGGACGATGATCATGTTTTCCTTCAAATTTTGGCACGCATGCTTGAAAAGAACAAATAC 120
|||||||||||||||||||||||| | || || ||||||||||| || | |||||||
Sbjct 61 GTGGACGATGATCATGTTTTCCTTGATATCATGTCACGCATGCTTCAACACTCCAAATAC 120
Query 121 ATAGATCCATCGGTTATGGAGATCACAGTTATAACTGTAGACGATCCAAAGAAAGCATTA 180
| ||||||||| |||||||||||| |||||||| ||||||||||||| ||||||||||||
Sbjct 121 AGAGATCCATCAGTTATGGAGATCGCAGTTATAGCTGTAGACGATCCGAAGAAAGCATTA 180
Query 181 TCTACTCTAGAAATTCAACGAGACAATATAGATCTCATAATCACAGATTATTACATGCCT 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TCTACTCTAAAAATTCAACGAGACAATATAGATCTCATAATCACAGATTATTATATGCCT 240
Query 241 GGCATGAACGGTGTACAACTCaaaaaaaaaaTCACTGAAAAATTTGGAAATTTACCGGTC 300
|| ||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct 241 GGTATGAACGGTTTACAACTCAAAAAACAAATCACTCAGGAATTTGGAAATTTACCGGTC 300
Query 301 TTAGTTATGTCATCAGACACAAACAAAGAAGAGGAGAGTTTAAGTGGTGGAGCGATGGGT 360
|||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 301 TTAGTTATGTCATCGGACACCAACAAAGAAGAGGAGAGTTTAAGTTGTGGAGCGATGGGT 360
Query 361 TTCATTCCAAAACCCATTAAA-CC-ATCTGACTTAACAAAGATTTACCAGTTTGCTTTAA 418
||||||||||||||||| | | || | |||||||||||||||||||||||||||||||||
Sbjct 361 TTCATTCCAAAACCCAT-ACATCCTA-CTGACTTAACAAAGATTTACCAGTTTGCTTTAA 418
Query 419 CCAGCAAGAGGAACAGTAAGTCAACATTATCAACCGAGCACAACCACAAGGACACAGATG 478
|| |||||||||| ||||||||||| |||| |||||||| |||||||||||| ||||||
Sbjct 419 GCAACAAGAGGAACGGTAAGTCAACACTATCGACCGAGCAAAACCACAAGGACGCAGATG 478
Query 479 TTATTGTCCCTCAGCAAATCATGTTGCTACCTGAACAAGCTGATGTCT 526
||| ||||||||||||||||| |||| | ||||| |||||||| ||||
Sbjct 479 TTAGTGTCCCTCAGCAAATCACGTTGGTTCCTGAGCAAGCTGACGTCT 526
> AT2G27070.1 | Symbols: ARR13, RR13 | response regulator 13 |
chr2:11555781-11560215 REVERSE LENGTH=1728
Length=1728
Score = 595 bits (322), Expect = 1e-169
Identities = 459/522 (88%), Gaps = 21/522 (4%)
Strand=Plus/Plus
Query 1 ATGGCTTTTGCTCAATCTTTCTACAACCAAAGCTCTGTCTTCAGAATCAATGTCATGGTT 60
|||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||
Sbjct 1 ATGGCTTTTGCTCAATCTGTCTACAACCAAAGCTCTGTCTTGAAAATCAATGTCATGGTT 60
Query 61 GTGGACGATGATCATGTTTTCCTTCAAATTTTGG-CACGCATGCTTGAAAAGAACAAATA 119
||||||||| ||| |||||||||| | | ||||| ||||||||||||||||| |
Sbjct 61 GTGGACGATAATCGTGTTTTCCTTGATA-TTTGGTCACGCATGCTTGAAAAG------TC 113
Query 120 CATAGATCCATCGGTTATGGAGATCACAGTTATAACTGTAGACGATCCAAAGAAAGCATT 179
|| | || | | | | |||||||| |||||| |||||||| |||| |||||||||||
Sbjct 114 CA-A-AT--A-CAG--A--GAGATCACGGTTATAGCTGTAGACTATCCGAAGAAAGCATT 164
Query 180 ATCTACTCTAGAAATTCAACGAGACAATATAGATCTCATAATCACAGATTATTACATGCC 239
|||||||||| ||| ||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 165 ATCTACTCTAAAAAATCAACGAGATAATATAGATCTTATAATCACAGATTATTACATGCC 224
Query 240 TGGCATGAACGGTGTACAACTCaaaaaaaaaaTCACTGAAAAATTTGGAAATTTACCGGT 299
||||||||||||| |||||||||||||| |||||||| || |||||||||||||| | ||
Sbjct 225 TGGCATGAACGGTCTACAACTCAAAAAACAAATCACTCAAGAATTTGGAAATTTATCAGT 284
Query 300 CTTAGTTATGTCATCAGACACAAACAAAGAAGAGGAGAGTTTAAGTGGTGGAGCGATGGG 359
||||||||||||||| ||| ||||||||||||| |||||||||||| ||||||| |||||
Sbjct 285 CTTAGTTATGTCATCGGACCCAAACAAAGAAGAAGAGAGTTTAAGTTGTGGAGCAATGGG 344
Query 360 TTTCATTCCAAAACCCATTAA-ACCATCTGACTTAACAAAGATTTACCAGTTTGCTTTAA 418
|||||||||||||||||| | |||| |||||||| ||||||||||||||||||||||||
Sbjct 345 TTTCATTCCAAAACCCAT-AGCACCAACTGACTTACCAAAGATTTACCAGTTTGCTTTAA 403
Query 419 CC-AGCAAGAGGAACAGTAAGTCAACATTATCAACCGAGCACAACCACAAGGACACAGAT 477
|| | |||||||||| |||| ||||||||||| |||||||| ||||| |||||| || ||
Sbjct 404 CCTA-CAAGAGGAACGGTAAATCAACATTATCGACCGAGCAAAACCAAAAGGACGCAAAT 462
Query 478 GTTATTGTCCCTCAGCAAATCATGTTGCTACCTGAACAAGCT 519
|||| |||||||||||||||||||||| | ||||| ||||||
Sbjct 463 GTTAGTGTCCCTCAGCAAATCATGTTGGTTCCTGAGCAAGCT 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28884634525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5