BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897440
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46240.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1731 0.0
> AT3G46240.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: receptor protein kinase-related (TAIR:AT3G46270.1);
Has 38685 Blast hits to 11525 proteins in 945 species: Archae
- 63; Bacteria - 11586; Metazoa - 8974; Fungi - 2953; Plants
- 5350; Viruses - 724; Other Eukaryotes - 9035 (source:
NCBI BLink). | chr3:16985843-16988064 REVERSE LENGTH=1305
Length=1305
Score = 1731 bits (937), Expect = 0.0
Identities = 1203/1324 (91%), Gaps = 48/1324 (4%)
Strand=Plus/Plus
Query 62 GCGTAAACATAGACTGTGGAACGTCATTGCCCGGTGTAGACAACAACAACCTAAAATGGG 121
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 14 GCGTAAACATAGACTGTGGAACGTCATTGCCAGGCGTAGACAACAACAACCTAAAATGGG 73
Query 122 TCGGAGACAAAGACTTCATCACATCCGGAGAGTCGGCCACCGTTTCGTCCACCACCGTAG 181
|||||||| |||||||||||||||||||||| ||||| || |||||||||||||||| |
Sbjct 74 TCGGAGACCAAGACTTCATCACATCCGGAGACTCGGCTACTATTTCGTCCACCACCGTTG 133
Query 182 AGAAATCCCTCACCACACTTCGGTACTTTCCCACCGGTGACTCCAATTGCTACTCCAACA 241
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 134 AGAAATCCCTCACCACACTTCGGTACTTTCCCACGGGCGACTCCAATTGCTACTCCAACA 193
Query 242 TTCCAGTTACAAAAGGTGGAAAAGTTCTTGTGAGAACGATGTTTTACTACGGGAATTACG 301
|||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 194 TTCCGGTTACAAAAGGCGGAAAAGTTCTAGTGAGAACCATGTTTTACTACGGGAATTACG 253
Query 302 ACGGGAAGTCCTCAACCCCATCCTTCAACGTAGTGTTTGAAGGGAAACACCGAGGCACCG 361
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 254 ACGGGAAGTCCTCAACCCCATCCTTCAGCGTAGTGTTTGAAGGGAAACACCGAGGCACCC 313
Query 362 TATCGATATCATCGGCGTTCGAACCTTATCTTTTGGAGCTGATATTTTCTCCGGCCAGCG 421
|||||||||| || || ||||||||||| ||| ||||| |||||||||| |||||| | |
Sbjct 314 TATCGATATCCTCAGCATTCGAACCTTACCTTCTGGAGTTGATATTTTCCCCGGCCGGTG 373
Query 422 GAGAGACCAGCGTTTGTTTTGTACGTACGTCTTCATCATCAAACCCTTTTGTATCTTCCA 481
||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 374 GAGAGACCAGCGTCTGTTTTGTACGTACTTCTTCATCATCAAACCCTTTTGTGTCTTCCA 433
Query 482 TTGAAGTT-TCCGACTTGGACGATGGCATGTATAACGAGCTTGGTCCTGGTGAAGGTAGA 540
|||||||| | ||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 434 TTGAAGTTGT-CGACTTGGATGATGGCATGTATGCCGAGCTTGGTCCTGGTGAAGGTAGG 492
Query 541 TTTTGGCTTCCATCCGATATAAACATATTGGTGACCGGAATACCGTCCGCGGCTGCATCG 600
||||||||||||||||| ||||||||||||||||| ||||||| |||| |||||| |||
Sbjct 493 TTTTGGCTTCCATCCGAGATAAACATATTGGTGACGGGAATACAGTCCACGGCTGTATCC 552
Query 601 ATCGATACCTCTGGTGCATCAAAC-AGACCGCCTGAGTCCGTCCTCCGTAACTCTTGGAC 659
|| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 553 ATTGATACCTCTGGTGCATCAAACAAG-CCGCCTGAGTCCGTCCTCCGTAACTCTTGGAC 611
Query 660 CGGAGAAGGCTTATCATTA-TACGACCCTACTCTTCCTTCGGCAGGAGTTCCGGTGTACT 718
||| ||||||||||||||| | |||||||||||||||||| |||||||||||||||||||
Sbjct 612 CGGGGAAGGCTTATCATTAGT-CGACCCTACTCTTCCTTCAGCAGGAGTTCCGGTGTACT 670
Query 719 TGGCTATGTATTTCTCGGAGCCTCTTCAGTCCAGTTTACGATCGTTCAACATTTTCTTTG 778
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 671 TGGCTATGTATTTCTCGGAGCCTCTAGAGTCAAGTTTACGATCGTTCAACATTTTCTTTG 730
Query 779 GTGGTAAGCAAGTTGGTAGGGGTCCTGTTGTGCCTGTGTTTGGAAAAGCCACACAAGTGG 838
||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||
Sbjct 731 GTGGTAAGCAAGTTGGTAGGGGTCCTGTTGTGCCTTTGTTTGGAAAAGCAACTCAAGTGG 790
Query 839 TCGTGAGAGATCTGGTGGCAAGCTCAAGCACCCAACTGACGTTATGGTCCACTGCTAGTG 898
||||||||||| ||||||| || |||||||||| ||||||| | ||||||||| ||||||
Sbjct 791 TCGTGAGAGATGTGGTGGCCAGTTCAAGCACCCTACTGACGCTCTGGTCCACTTCTAGTG 850
Query 899 CGCTTTTACCGCCCATGATAAATGCGGCCGAGCTTTATGTGATAAGTAAGGGTACAAGCG 958
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 851 CGCTTTTACCGCCCATGATAAATGCGGCCGAGCTTTATGTAATTAGTAAGGGTACAAGCG 910
Query 959 AAGGCACAGGTGGAAACGGAA--G-T---GGTTCAGGATCAGGATCAGGTGGAAGCGGAG 1012
|| ||||||| ||||||| || | | ||||||||||||||||| |||||||| ||||
Sbjct 911 AAAGCACAGGCGGAAACGAAACTGGTTCCGGTTCAGGATCAGGATCCGGTGGAAGTGGAG 970
Query 1013 GAGGAGGATCTGGGAGCAGTGGATCCGGATCTGGCTCTGGTGGGAGTAGCAAAGGAGGAA 1072
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 971 GAGGAGGATCTGGGAGCAGTGGATCCGGATCTGGCTCAGGTGGGACTAGCAAAGGAGGAA 1030
Query 1073 CTGGAGGAAGCAATGAAGTGAGTCCAGGTGGATCAACCAATGGAAAGAGCAGTAAACTGC 1132
||||||| || | | || | | | | ||||||||||||||||||||||
Sbjct 1031 CTGGAGG------TG--G--A-TC-A-----A-C--C-AATGGAAAGAGCAGTAAACTGC 1069
Query 1133 CAATTATACTCGGTGTGGTATCCGCCG-TTGCGTTTGTTCTTGTCGCATATGTGTTCATC 1191
|||||||||||||||| || || ||| ||||||||||||||||||||||||||||||||
Sbjct 1070 CAATTATACTCGGTGTAGTGTCA-CCGGTTGCGTTTGTTCTTGTCGCATATGTGTTCATC 1128
Query 1192 GCTATAATCTTAGCTAATCGTCGCAAAGTGAGGCTGCAAGCCTTGGCTATGCCTACTTCC 1251
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1129 GCTATAATCTTAGCTAATCGTCGCAAAGTGAGGCTGCAAGCCTTGGCTATGCCTACGTCC 1188
Query 1252 ACAGTGGCTAATATGGGGACTGGAGCGTCAACTCTGTTCACACAACAGATGGAAAACGAT 1311
|||||||||| ||||||||||||| |||||||||||||||||||||||||||| || |||
Sbjct 1189 ACAGTGGCTACTATGGGGACTGGACCGTCAACTCTGTTCACACAACAGATGGACAATGAT 1248
Query 1312 TC-A-A--A--CCAGCCTACAAATGAATCAGACATGGGGGAGATCGACGACCTTATTGGA 1365
|| | | | |||||||||||||||| | |||| |||||||||||||||| ||||
Sbjct 1249 TCTACATCAAACCAGCCTACAAATGAA--A----TGGGAGAGATCGACGACCTTACTGGA 1302
Query 1366 ATGA 1369
|||
Sbjct 1303 -TGA 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68573944470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5