BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897443
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46240.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 575 4e-163
> AT3G46240.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: receptor protein kinase-related (TAIR:AT3G46270.1);
Has 38685 Blast hits to 11525 proteins in 945 species: Archae
- 63; Bacteria - 11586; Metazoa - 8974; Fungi - 2953; Plants
- 5350; Viruses - 724; Other Eukaryotes - 9035 (source:
NCBI BLink). | chr3:16985843-16988064 REVERSE LENGTH=1305
Length=1305
Score = 575 bits (311), Expect = 4e-163
Identities = 428/484 (88%), Gaps = 10/484 (2%)
Strand=Plus/Plus
Query 62 GCGTAAATATAGACTGCGGAACGTCATTGCCGCGG-TTAGACAAGAACAACATAAAATGG 120
||||||| |||||||| |||||||||||||| || ||||||| |||||| ||||||||
Sbjct 14 GCGTAAACATAGACTGTGGAACGTCATTGCC-AGGCGTAGACAACAACAACCTAAAATGG 72
Query 121 GTAGGAGACAAAGACTTCATCACATCCGGAGAGTCTTCCACGGTTTTGTCCACCACTGTC 180
|| |||||| |||||||||||||||||||||| || | || ||| ||||||||| ||
Sbjct 73 GTCGGAGACCAAGACTTCATCACATCCGGAGACTCGGCTACTATTTCGTCCACCACCGTT 132
Query 181 GAGAAATACCTCACCACACTTCGGTACTTTCCTACCGGCGACTCCAATTGCTACTCCAAC 240
||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 133 GAGAAATCCCTCACCACACTTCGGTACTTTCCCACGGGCGACTCCAATTGCTACTCCAAC 192
Query 241 ATTCCGGTTACCAAAGGCGGAAAA-TTCTTAGTGAGAACGATGTTTTACTATGGGAACTA 299
||||||||||| |||||||||||| |||| ||||||||| ||||||||||| ||||| ||
Sbjct 193 ATTCCGGTTACAAAAGGCGGAAAAGTTCT-AGTGAGAACCATGTTTTACTACGGGAATTA 251
Query 300 TGATGGGAAGTCCTCATCCCCAACCTTCAGCGTATTGTTTGAAGGGAAACACCGAGGCAC 359
|| |||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 252 CGACGGGAAGTCCTCAACCCCATCCTTCAGCGTAGTGTTTGAAGGGAAACACCGAGGCAC 311
Query 360 CGTATCGATATCCTCTGCGTTCGAACCTTACCTTTTGGAGCTGATCTTTTCTCCGGCTAG 419
| ||||||||||||| || ||||||||||||||| ||||| |||| ||||| ||||| |
Sbjct 312 CCTATCGATATCCTCAGCATTCGAACCTTACCTTCTGGAGTTGATATTTTCCCCGGCCGG 371
Query 420 TGAAGAGACCAGCGTTTGTTTTGTACGTACGTCTTCATCATCAAACCCTTTTGTATCTTC 479
|| |||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 372 TGGAGAGACCAGCGTCTGTTTTGTACGTACTTCTTCATCATCAAACCCTTTTGTGTCTTC 431
Query 480 CATTGAAGTTTTCGACTTGGAAAATGGCATGTATAAGTATAACGAGCTTGGTCCTGGTGA 539
|||||||||| |||||||||| ||||||||||| | ||||||||||||||||||
Sbjct 432 CATTGAAGTTGTCGACTTGGATGATGGCATGTAT--GC----CGAGCTTGGTCCTGGTGA 485
Query 540 AGGT 543
||||
Sbjct 486 AGGT 489
Score = 536 bits (290), Expect = 2e-151
Identities = 633/792 (80%), Gaps = 49/792 (6%)
Strand=Plus/Plus
Query 602 AAGGTAGGTTCTGGCTTCCGTTGGAGATAAACATATTGTTGACAGGAGTACCA-TCCACG 660
|||||||||| |||||||| | ||||||||||||||| |||| ||| || || ||||||
Sbjct 485 AAGGTAGGTTTTGGCTTCCATCCGAGATAAACATATTGGTGACGGGAATA-CAGTCCACG 543
Query 661 GCTGCATCAATCGATATCTCTGGTGCATCAAACAAGCCACCTGAGTCCGTCCTCCGTAAC 720
|||| ||| || |||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 544 GCTGTATCCATTGATACCTCTGGTGCATCAAACAAGCCGCCTGAGTCCGTCCTCCGTAAC 603
Query 721 TCTTGGACCGGGGAAGGCTTATCATTAGTTGACCCTACTCTTCCTTCGGAAGGAGTTCCA 780
||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 604 TCTTGGACCGGGGAAGGCTTATCATTAGTCGACCCTACTCTTCCTTCAGCAGGAGTTCCG 663
Query 781 GTTTATTTGGCTATGTATTTCTCAGAGCCTCTTGAGTTGAGTGTACGATCGTTCAACATA 840
|| || ||||||||||||||||| |||||||| |||| ||| ||||||||||||||||
Sbjct 664 GTGTACTTGGCTATGTATTTCTCGGAGCCTCTAGAGTCAAGTTTACGATCGTTCAACATT 723
Query 841 TTATATGGCGGTAAGCAAGTTGGTAAAGGACCAATTGTGCCCGTGTATGGAAAAGCCACG 900
|| | ||| |||||||||||||||| || || ||||||| ||| ||||||||| ||
Sbjct 724 TTCTTTGGTGGTAAGCAAGTTGGTAGGGGTCCTGTTGTGCCTTTGTTTGGAAAAGCAACT 783
Query 901 CAAGTGGTCGTGAGAGATGTGGTGGCTAGCTCAAGCTCCG-AGCTGGTGTTCCAGTCCAC 959
|||||||||||||||||||||||||| || |||||| || | ||| | || ||||||
Sbjct 784 CAAGTGGTCGTGAGAGATGTGGTGGCCAGTTCAAGCACCCTA-CTGACGCTCTGGTCCAC 842
Query 960 CCCTAGTGCGCTGTTACCGCCCATTATAAATGCGTTGGAGATTTATGTGATAAGTACGGG 1019
|||||||||| ||||||||||| ||||||||| ||| ||||||| || |||| |||
Sbjct 843 TTCTAGTGCGCTTTTACCGCCCATGATAAATGCGGCCGAGCTTTATGTAATTAGTAAGGG 902
Query 1020 TACAAGTGGAAGCGGAGGCGGAAACAAAAGC-GGATCAGGATCCGG-TGGAGG-TGC--T 1074
|||||| | |||| |||||||||| ||| | || || || || || | ||| | | |
Sbjct 903 TACAAGCGAAAGCACAGGCGGAAACGAAA-CTGGTTCCGGTTCAGGATC-AGGATCCGGT 960
Query 1075 GGAAGCGGAGGAGGAGGGTCTAAGAGTGGCGGATCTGGA---GGCTCTGGTGGAACTAAC 1131
||||| ||||||||||| ||| ||| | ||||| ||| ||||| ||||| |||| |
Sbjct 961 GGAAGTGGAGGAGGAGGATCTGGGAGCAGTGGATCCGGATCTGGCTCAGGTGGGACTAGC 1020
Query 1132 AATGGAGGAACTGGAGGGAGCAATGATGTGAGCTCAGGTGGGTCAGCCAGTGAAGGAAAG 1191
|| |||||||||||||| || | | ||| | ||| || | ||||
Sbjct 1021 AAAGGAGGAACTGGAGG------TG--G--A--TCA--------A-CCAATG--G-AAAG 1056
Query 1192 AATAGTAAACTGCCAACTATACTCGGT-TC-TGT-ATCCGCAGTAGTGTTTGCTCTCATC 1248
| ||||||||||||| |||||||||| | ||| | ||| || | ||||| ||| ||
Sbjct 1057 AGCAGTAAACTGCCAATTATACTCGGTGTAGTGTCA-CCG--GTTGCGTTTGTTCTTGTC 1113
Query 1249 GCATATGTGTTCATTGCTGTTATCTTAGCGAATCGTCGCAAAGCAAGGCTACAAGCCCTG 1308
|||||||||||||| ||| | |||||||| ||||||||||||| ||||| |||||| ||
Sbjct 1114 GCATATGTGTTCATCGCTATAATCTTAGCTAATCGTCGCAAAGTGAGGCTGCAAGCCTTG 1173
Query 1309 GCTATACCTACGTC-A--GTGGCT-CATATGGCTACTGGATCATCCCCTCTATTCGGACA 1364
||||| |||||||| | |||||| | ||||| |||||| | || |||| ||| |||
Sbjct 1174 GCTATGCCTACGTCCACAGTGGCTAC-TATGGGGACTGGACCGTCAACTCTGTTCACACA 1232
Query 1365 ACAAATGGGCAA 1376
||| |||| |||
Sbjct 1233 ACAGATGGACAA 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72037782075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5