BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897457
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46450.2 | Symbols: | SEC14 cytosolic factor family protein... 2217 0.0
> AT3G46450.2 | Symbols: | SEC14 cytosolic factor family protein
/ phosphoglyceride transfer family protein | chr3:17092938-17095639
REVERSE LENGTH=2085
Length=2085
Score = 2217 bits (1200), Expect = 0.0
Identities = 1396/1491 (94%), Gaps = 12/1491 (1%)
Strand=Plus/Plus
Query 1 ATGGGAGACAATTCCGGTAGAAGTAGAAACTCTGTGATGGCAACTGTTTCTTCTGGGAAA 60
||||| || ||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 242 ATGGGGGATAATTCTGGTAGAAGTAGAAACTCTATGATGGCAACTGTTTCTTCTGGGAAA 301
Query 61 GAGTTGTTACCTAAGAGAAGCTTAGTAGCTGCTATTCCAAGAGCGGTTCAGCAGACAATA 120
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 302 GAGTTGTTACCTAAAAGAAGCTTAGTAGCTGCTATTCCAAGAGCTGTTCAGCAGACAATC 361
Query 121 TATAAGCATGTTTCATTGGGGAATAATGGTAGAATTGGTAGTGGAACCGTTCGTAATGCA 180
| |||||||||||| || |||| |||||||||| |||| |||||||||| ||||||||||
Sbjct 362 TCTAAGCATGTTTCTTTTGGGAGTAATGGTAGATTTGGAAGTGGAACCGCTCGTAATGCA 421
Query 181 GCGGTGTTTCTGCTGAAAATCGCGGTTTTGGAAGTTGTTCGAAGGGTTTCGAAGGCTAGA 240
|| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||| |
Sbjct 422 GCTGTGTTTCTGCTTAAAATCGCTGTTTTAGAAGTTGTTCGAAGGGTTTCAAAGGCTAAA 481
Query 241 TGTCCTCATTTGTGGAATAGTCTTCAGGCGTTGCAATGTCTTTGTTATCCTCCTCTTAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TGTCCTCATTTGTGGAATAGTCTTCAGGCGTTGCAATGTCTTTGTTATCCTCCTCTTAAG 541
Query 301 TGGATTCAGAGATGGGCTCCTTTCAAGGAGTTGATCAAGGCAATGCAGTCTCAATTATTG 360
|||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 542 TGGATTCAAAGATGGGCTCCTTTCAAGGAGTTGATCAATGCAATGCAG------TTATTG 595
Query 361 TGTGTGATCGTTATGCAGATGCTGTCTCGGCCATTATTGGTCCTCACCATAGCTGAGGCT 420
||||||||||||||||||||| ||||||||||||| |||||| |||| ||||||||||||
Sbjct 596 TGTGTGATCGTTATGCAGATGTTGTCTCGGCCATTGTTGGTCATCACGATAGCTGAGGCT 655
Query 421 CTCACAGACCAGTCAGAGTTAAAGCAAGAAGCCTCAGGTGGTACCACTTCTCATACATC- 479
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 656 CTGACAGACCAGTCAGAGTTAAAGCAAGAAGCCTCAGGTGGTACCAATTCTCATGCATCT 715
Query 480 T-----TCAGAATCACAATCTTACCCACAGACGTCACAGTCTCCATCAGATATAAGAATT 534
| ||||||||||||||| || | ||||| | |||||||||||||||||||||||||
Sbjct 716 TCAGAATCAGAATCACAATCTGACTCGCAGACTTTACAGTCTCCATCAGATATAAGAATT 775
Query 535 GAAGATGAGGCTCCACTTTCTGTAACTTCACAAGACTGGCTTAGGCAACTCTATGAAGAA 594
|||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||
Sbjct 776 GAAGATGAGGCTCCACTTCCTGTAATTTCACAAGACTGGCTTAGAAAACTCTATGAAGAA 835
Query 595 CTGGAAAAGCAGAGACTTAGCTTGCCTGAGAGACTCAACGAAGACGAGCTTCATAGATTC 654
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 836 CTGGAAAAGCAGAGACTTAGCTTACCAGAGAGACTCAATGAAGACGAGCTTCATAGATTC 895
Query 655 TATAGAGTGTCAAATGGAGACTTCACATCCTTACTATCTTCAATAAAAAAGACAATTCAT 714
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 896 TACAGGGTGTCAAATGGAGACTTCACATCCTTACTATCTTCGATAAAAAAGACAATTCAT 955
Query 715 TGGAGGGAGACTTACAGAATCCTATCTGAAGAGGAACTTGAGACATGGTCAAGTTTAGTC 774
|||||||||||||||||||| || |||||||| |||||||||||||||||||||||| ||
Sbjct 956 TGGAGGGAGACTTACAGAATTCTTTCTGAAGAAGAACTTGAGACATGGTCAAGTTTACTC 1015
Query 775 TTTTGGCATGGATATGACAAGAACCAACGACCTTGCCTCATTGTTCGCTTGGGGCTTGCT 834
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1016 TTTTGGCATGGATATGATAAGAACCAACGACCTTGCCTCATTGTTCGTTTGGGGCTAGCT 1075
Query 835 TTTCTAAAGTTGCCATCTCATGAAAGACCTCGTTTCGCTCAAGCAATCATATCTCAGGTA 894
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1076 TTTCTAAAGTTGCCATCTCATGAGAGACCTCGTTTCGCTCAGGCAATCATATCTCAGGTA 1135
Query 895 GAGCACGGCGTTTTGCATCTTTTGACCCCTGAGAATTCAGAACTTACTGTTTTAGTCGAT 954
||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct 1136 GAGCACGGCGTTTTGCATCTTCTGACCCCTGAGAATTCAGAACTTACAGTGTTAGTCGAT 1195
Query 955 TGTGAAGGATTATCTCCTCTGAGGATTCCCATGCAGATGATGAGATCTTGTTCATCCATT 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1196 TGTGAAGGATTATCTCCTCTGAGGATTCCCATGCAGATGATGAGATCTTGTTCTTCCATT 1255
Query 1015 CTTCAAGATCACTTCCCTAACCGTCTTGGCTGCCTATTTATCATTCGCCTCCCTCCTTTT 1074
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1256 CTTCAAGATCACTTCCCTAACCGTCTTGGCTGCCTATTCATCATTCGCCTCCCTCCTGTT 1315
Query 1075 GTTCGAGTCATTTCCCAGACTTTCATCCAAATTCTTAGACCAACCACACGCAAGAAGCTG 1134
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GTCCGTGTCATTTCCCAGACTTTCATCCAAATTCTTAGACCAACCACACGCAAGAAGCTG 1375
Query 1135 AGAATTGAAGGGGAAACTTTCCATCGAGTCCTCTCTGAATACCTCCAGACACTTCCTTCA 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 AGAATTGAAGGGGAAACTTTCCATCGAGTCCTCTCTGAATACCTCCAGACACTTCCTTCA 1435
Query 1195 TACCTTGGCAGCAACTGCAACTGCAAAAGATGCTCAAATCTCAGCGAACAAGATCCACAA 1254
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1436 TACCTTGGTAGCAACTGCAACTGCAAAAGATGCTCAAATCTCAACGAACAAGATCCACCA 1495
Query 1255 CAACCACAAACACACCCAAGAAGCAAGAGAAGAAGCTTGAGTGAAACAGAGAAGCTAGAC 1314
|| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1496 CAGCCACAAACACACCCAAGAAGAAAGAGAAGAAGCTCGAGTGAAACAGAGAAGCTAGAC 1555
Query 1315 GATAGCCACTGGAGTTACAATGTCCAGACTCCTGATTTAGCCTATGAAGACGAGCCGAGC 1374
|| ||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||
Sbjct 1556 GACAGCCACTGGAGTTACAATGCCCAGACACCTGATTTATCCTATGAAGACGAGCCGAGC 1615
Query 1375 CTGAACATATGTAGCCAAGTGCTACGGACAGCGGTAGTGTTCTTGCTCGTGACATGGCTC 1434
||||||||||| |||||||| || || ||||| || |||||||| ||| ||| |||||||
Sbjct 1616 CTGAACATATGCAGCCAAGTTCTGCGAACAGCAGTCGTGTTCTTACTCATGATATGGCTC 1675
Query 1435 TTTGGGGCACTACTAGCTGGATTCGCTGATCCTGAGAGCAGACCCTTTTAA 1485
|| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1676 TTCGGTGCACTACTAGCTGGATTTGCTGATCCTGAGAGCAGACCCTTTTAA 1726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73242595155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5