BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897459

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13235.1 | Symbols:  | ubiquitin family protein | chr3:42712...   298    4e-80
  AT3G06170.1 | Symbols:  | Serinc-domain containing serine and s...   281    4e-75


> AT3G13235.1 | Symbols:  | ubiquitin family protein | chr3:4271258-4274455 
REVERSE LENGTH=1586
Length=1586

 Score =  298 bits (161),  Expect = 4e-80
 Identities = 179/188 (95%), Gaps = 0/188 (0%)
 Strand=Plus/Plus

Query  104  GATTGCTGAGACTTATGGATCAACGCTATAAAGGTATTGCCCATGGTGTTGGCCAGTCAG  163
            ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||  |||
Sbjct  811  GATTGCTGAGACTTATGGACCAACGCTACAAAGGTATTGCCCATGGTGTTGGCCAAACAG  870

Query  164  AGATATTGGGCCGCATTCATGTTGCTCCTATCAAGATCGGAAATAACTTTTACCCGTGTT  223
            ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct  871  AGATATTGGGCCGCATTCATGTTGCTCCTATCAAGATTGGAAACAACTTTTACCCTTGTT  930

Query  224  CATTCGTGGTGCTGGACTCACCTAACATGGAATTTCTATTTGGCCTGGATATGTTGCGTA  283
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct  931  CATTCGTGGTGCTGGACTCACCTAACATGGAATTTCTGTTTGGCCTGGATATGCTGCGTA  990

Query  284  AGCATCAG  291
            ||||||||
Sbjct  991  AGCATCAG  998


> AT3G06170.1 | Symbols:  | Serinc-domain containing serine and 
sphingolipid biosynthesis protein | chr3:1867415-1869948 FORWARD 
LENGTH=1545
Length=1545

 Score =  281 bits (152),  Expect = 4e-75
 Identities = 186/202 (92%), Gaps = 3/202 (1%)
 Strand=Plus/Plus

Query  424   GGTGTAAAGGAGGCATTGTTAGAAGACCCCGAGGACGAGAAGAAGACGAGTGGTGAAGCC  483
             ||||| ||||| ||||||||||  ||||| ||||||| |  ||||| |||||||||||||
Sbjct  1045  GGTGTGAAGGATGCATTGTTAGGGGACCCTGAGGACG-G--GAAGAAGAGTGGTGAAGCC  1101

Query  484   GAGGCACGACCTGTGAGTTACTCATACTCCTTCTTCCATATCATCTGTGCGCTTGCGAGC  543
             |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  1102  GAGGCACGGCCTGTGAGTTACTCATACTCCTTCTTCCATATCATCTTTGCGCTTGCGAGC  1161

Query  544   ATGTATGGTGCAATGCTTCTCTCGGGATGGACTGACTCATCAAAGAATGCGACTCTGATT  603
             ||||| | |||||||||||||||||||||||||||||||||| ||| |||||||||||| 
Sbjct  1162  ATGTACGCTGCAATGCTTCTCTCGGGATGGACTGACTCATCAGAGAGTGCGACTCTGATC  1221

Query  604   GATGTGGGATGGACCTCGGTCT  625
             ||||||||||||||||||||||
Sbjct  1222  GATGTGGGATGGACCTCGGTCT  1243



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30240956494


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5