BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897462
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09650.1 | Symbols: | F-box and associated interaction doma... 741 0.0
AT1G12490.1 | Symbols: | F-box associated ubiquitination effec... 244 1e-63
AT5G16285.1 | Symbols: | F-box family protein | chr5:5332830-5... 171 2e-41
> AT1G09650.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:3125807-3127284 FORWARD LENGTH=1478
Length=1478
Score = 741 bits (401), Expect = 0.0
Identities = 830/1029 (81%), Gaps = 62/1029 (6%)
Strand=Plus/Plus
Query 27 GATGATGGAATCGCTGCCCCACGATGCCGTAGAGCT-TATCCTGGAGAGACTTCCGGCGA 85
|||||||||||||||||||||||| | ||||||| | ||||| ||||||||| |||
Sbjct 195 GATGATGGAATCGCTGCCCCACGAGGTCGTAGAG-TGCATCCTAGAGAGACTTGATGCG- 252
Query 86 AAT-CTCTGCTGAGATTCAAGGCTGTATCGAAGCAATGGAAATCAACGATCCAATG-CCA 143
|| |||||||||||||||||||||||||||| |||||||||||||| || ||| |||
Sbjct 253 GATCCTCTGCTGAGATTCAAGGCTGTATCGAAACAATGGAAATCAACTATTGAATCTCCA 312
Query 144 ACTCTTCCAA-GAAAGACACTTGAGGCAGCGTCAGCAATTAGGGGATCCAGATGTCCTCA 202
||||||| ||| |||| || | ||||||||||||| ||| |||||||||| ||||
Sbjct 313 T-TCTTCCAGCGAA-GACAGTTCACACAGCGTCAGCAATCAGGTAATCCAGATGTTCTCA 370
Query 203 TGGTGTCCCTACGTCGTGAGGATGTTATCAACCCGGACATCGAATCTCTAACAACATTGG 262
|||| |||| || ||| ||| ||| | | ||| || ||| |||| || |||||||
Sbjct 371 TGGTCTCCC---GTTGTGCTGATATTA--ATTC-GGAAATAGAAGCTCTTACTACATTGG 424
Query 263 TGTTGGGTTCATCATCGTCACCGGTCAAGATCCATACTCCTTGGGAG-A--AGGAG-A-- 316
|||||||||||||||| || | ||||||||| ||||||||||||| | ||||| |
Sbjct 425 TGTTGGGTTCATCATCATCT--G-TCAAGATCCCTACTCCTTGGGAGGAGGAGGAGGAGG 481
Query 317 AC-ACA--GATTACT-TAGTTTCCCAT-AGTAGCTGTGACGGTCTCGTTTGTCTCTACAA 371
| ||| || |||| | |||||||| | |||||||||||||||||||||||||| | |
Sbjct 482 AGGACAAAGAATACTCT-GTTTCCCAGGA-TAGCTGTGACGGTCTCGTTTGTCTCTTCGA 539
Query 372 TCCCCACCATTCCGGTTTCGTGGTT-AATCCCACCACTAGATGGCATCGGCCTCTTCCTG 430
| | | |||||||| ||| || |||||| ||||||||||| ||| |||||||||
Sbjct 540 TAAATTCAAATCCGGTTTTGTG-TTCAATCCCGCCACTAGATGGTATCACCCTCTTCCTC 598
Query 431 TCTGCGAATTACAACAACTCATTATCGACTTACGAGACAGTTTCTACC-TCCTCGGATAC 489
||||| |||||||||||||| |||| | | || | ||| |||||||| || | ||||||
Sbjct 599 TCTGCCAATTACAACAACTCCTTATTGCCATAGGCGACGGTTTCTACGATCTT-GGATAC 657
Query 490 GGACTATACAAG-CTTGGATTCGGTAAAGACAAATTCACCGGCACTTACAAGCCTGTTTG 548
|| | | | || ||||||||||||||||||||| |||| ||||| |||||||| |||||
Sbjct 658 AGAGTCT-CTAGGCTTGGATTCGGTAAAGACAAACTCACAGGCACATACAAGCCCGTTTG 716
Query 549 GTTATACAACTCTCTAGAAATAGGCTTAGAAAACGCCACTACATGCGAAGTTTTCGACTT 608
||||||||||||| ||||||| ||| |||||||||| ||||||||||| |||||||||||
Sbjct 717 GTTATACAACTCTATAGAAATTGGCCTAGAAAACGCTACTACATGCGAGGTTTTCGACTT 776
Query 609 TAGCACCAATGCTTGGAGGTATGTCACTCCCGCTGCTCCTTATCGGGTTGTTCATTTCCC 668
||||||||| |||||||||||||| | || |||||||||||| || ||||| || |||
Sbjct 777 TAGCACCAACGCTTGGAGGTATGTTTCACCAGCTGCTCCTTATAGGATTGTTGGTTGCCC 836
Query 669 CG-ATCCTGTCTATGTAGATGGGTCTCTTCATTGGTTCACCGACTGCCAAGAAACCAAAG 727
|| | ||||||| ||||||||||| ||||||||||||||||| ||| | |||||||||
Sbjct 837 CGCA-CCTGTCTGCGTAGATGGGTCGCTTCATTGGTTCACCGAGTGCGAGGAAACCAAAA 895
Query 728 TTGTATCCTTCGATCTTCACACTGAAGCGTTTCAAGTCATCTCTAAAGCTCCCTTTGCCA 787
|| | || |||||||||||||| ||| | |||||||| |||||||||||||||||||||
Sbjct 896 TTCTTTCGTTCGATCTTCACACCGAAACCTTTCAAGTTGTCTCTAAAGCTCCCTTTGCCA 955
Query 788 AGAATGAAAATCCTTTCGACATCGTCATGTGCAACCTCGACAACCGTTTGTGCGTATCCC 847
| || | || ||||| || ||||||||||||||||||||||| |||||||| |||
Sbjct 956 A---TGTAGATGGATTCGATATAGTCATGTGCAACCTCGACAACCGCTTGTGCGTTTCCG 1012
Query 848 AGCA-GAAG-TGGCCCAATCAAGTTATATGGTCCTTCCATTCAAACAACAAGACGTGGGA 905
|| | |||| || ||||| ||||| |||||||| ||| ||||| |||||||| ||| |
Sbjct 1013 AG-ATGAAGCTG-CCCAACCAAGTGATATGGTCATTCAATTCAGGTAACAAGACATGGCA 1070
Query 906 GAAAATGTACTCCAT-A----G-ATGTAACCGTT-TCTTTGGTTGGGAAGC-AC--A--T 953
||||||| ||||| | | || |||| || || |||||| || | || | |
Sbjct 1071 CAAAATGTGTTCCATTAATCTGGATATAAC--TTCTCGTTGGTTTGGTC-CTACTCAAGT 1127
Query 954 ATGCGCAC-TCCCGCCACTAGCACTTTTGGATGGgaagaagaagaagaagaagaagCTGC 1012
|||||| | || ||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1128 ATGCGC-CGTCTTGCCACTAGCACTTTTGGATGGGAAGAAGAAGAAGAAGAAAAAGTTGT 1186
Query 1013 TATTTTATT 1021
| |||||||
Sbjct 1187 TGTTTTATT 1195
> AT1G12490.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:4260783-4261869 FORWARD LENGTH=1059
Length=1059
Score = 244 bits (132), Expect = 1e-63
Identities = 290/363 (80%), Gaps = 23/363 (6%)
Strand=Plus/Plus
Query 306 GGAGAAGGAGAAC-ACAG-A-T-TACTTAGTTTCCCATAG-TAGCTGTGACGGTCTCGTT 360
|||||||||| || | || | | | |||||||| | | | |||||||||||||||||||
Sbjct 276 GGAGAAGGAGGACGA-AGAATTCTTCTTAGTTT-CTTTTGATAGCTGTGACGGTCTCGTT 333
Query 361 TGTCTCTACAA-TCCCC-ACCATTCCGGTT-TCGTGGTTAATCCCACCACTAGATGGCAT 417
||||||||||| | | | || | |||| | ||||| |||||||||||||||||| ||
Sbjct 334 TGTCTCTACAAATACTGGAA-AT-CTGGTTAT-GTGGTCAATCCCACCACTAGATGGTAT 390
Query 418 CGGCCTCTTCCTGTCTG-CGAATTACAACAACTCATTATC-GACTTACGA-GACAGTTTC 474
|| ||||||||| ||| | |||||||||||||| ||||| | |||| | | |||| ||
Sbjct 391 CGCCCTCTTCCTCTCTCTC-AATTACAACAACTCCTTATCAG-CTTAGGTCG-CAGTGTC 447
Query 475 TACCTCCTCGGATACGGACTATACAAGCTTGGATTCGGTAAAGACAAATTCACCGGCACT 534
| | || |||||| | | | | |||||||||||||||||||| |||| |||||
Sbjct 448 TTCGAGCTTGGATACACAGTCTGTGATATTGGATTCGGTAAAGACAAAATCACGGGCACA 507
Query 535 TACAAGCCTGTTTGGTTATACAACTCTCTAGAAATAGGC-TTAGAAAACGCCACTACATG 593
||||| || |||||||||||||| ||| ||||||| ||| || |||||||| ||||||||
Sbjct 508 TACAAACCCGTTTGGTTATACAATTCTTTAGAAATTGGCCTT-GAAAACGCTACTACATG 566
Query 594 CGAAGTTTTCGACTTTAGCACCAATGCTTGGAGGTATGTCACTCCCG-CTGCTCCTTATC 652
||| ||||||||||||| |||||| |||||||| ||||| |||| | | ||||| ||||
Sbjct 567 CGAGGTTTTCGACTTTAACACCAACGCTTGGAGATATGTTTCTCC-GACCGCTCCCTATC 625
Query 653 GGG 655
|||
Sbjct 626 GGG 628
> AT5G16285.1 | Symbols: | F-box family protein | chr5:5332830-5333102
REVERSE LENGTH=273
Length=273
Score = 171 bits (92), Expect = 2e-41
Identities = 154/183 (84%), Gaps = 7/183 (4%)
Strand=Plus/Plus
Query 30 GATGGAATCGCTGC--C-CCACGATGCCGTAGAGCTTATCCTGGAGAGACTTCCGGCGAA 86
||| |||||||||| | || |||| ||||||| ||||||||||||||| ||| |||
Sbjct 6 GATTGAATCGCTGCTGCAACATGATGTAGTAGAGCGAATCCTGGAGAGACTTGCGGTGAA 65
Query 87 ATCTCTG-CTGAGATTCAAGGCTGTATCGAAGCAATGGAAATCAACGATCCAATGCCAAC 145
|||||| || |||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 66 TTCTCTGCCT-CGATTCAAGGCTGTATCGAAGCAATGGAAATCAACAATTGAATCCCAAT 124
Query 146 TCTTCCAAG-AAAGACACTTGAGGCAGCGTCAGCAATTAGGGGATCCAGATGTCCTCATG 204
||||||||| ||| |||||||| ||| |||||||||| ||| ||||||| ||| ||||||
Sbjct 125 TCTTCCAAGGAAA-ACACTTGACGCATCGTCAGCAATCAGGAGATCCAGTTGTTCTCATG 183
Query 205 GTG 207
|||
Sbjct 184 GTG 186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5