BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897463

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G11410.1 | Symbols: ATPP2CA, AHG3, PP2CA | protein phosphata...   132    2e-30


> AT3G11410.1 | Symbols: ATPP2CA, AHG3, PP2CA | protein phosphatase 
2CA | chr3:3583883-3585790 REVERSE LENGTH=1639
Length=1639

 Score =  132 bits (71),  Expect = 2e-30
 Identities = 104/119 (87%), Gaps = 5/119 (4%)
 Strand=Plus/Minus

Query  15    TATTCCTCCTCTTCCTCCTGTCAACCACTGTACCACAACGCTCACGTTATCGGAGCTCTG  74
             |||||||||||||||||  |||||||||   |  || |||||||||||||||||||||||
Sbjct  1324  TATTCCTCCTCTTCCTCAAGTCAACCAC---A--ACGACGCTCACGTTATCGGAGCTCTG  1270

Query  75    TCTTGCTAGAGCCAACTTTGTTAATAGCAATGAAGCATCAGAGCAAGCATTGTGTGCCG  133
             |||||||||||||||||||||||| ||||| |  ||||| ||||| |||||||| ||||
Sbjct  1269  TCTTGCTAGAGCCAACTTTGTTAAGAGCAACGCCGCATCGGAGCACGCATTGTGCGCCG  1211



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10556227290


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5