BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897469

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G45580.1 | Symbols:  | RING/U-box protein with C6HC-type zin...   117    9e-26
  AT3G43750.1 | Symbols:  | RING/U-box protein with C6HC-type zin...   110    1e-23
  AT3G45540.1 | Symbols:  | RING/U-box protein with C6HC-type zin...  52.8    2e-06


> AT3G45580.1 | Symbols:  | RING/U-box protein with C6HC-type zinc 
finger | chr3:16729989-16731511 REVERSE LENGTH=1227
Length=1227

 Score =  117 bits (63),  Expect = 9e-26
 Identities = 130/160 (81%), Gaps = 14/160 (9%)
 Strand=Plus/Plus

Query  1    ATGGAAACAATAGTTTCTGAAATCAGCATACATATGCCTCCTCTTCAGAAGAAGACTTGC  60
            ||||||||||||||||||||||||||||||||||| |||  || |  ||  |||||||||
Sbjct  463  ATGGAAACAATAGTTTCTGAAATCAGCATACATATACCTGATCAT--GAC-AAGACTTGC  519

Query  61   CGTATCTGTTTCGACGA-A-----G--C-TGAGCAT-ATGTTTACTATTGCTTTATGCGG  110
             |||| |||| ||| || |     |  | ||||| | |||||| || |||||||||||||
Sbjct  520  AGTATATGTTCCGATGATAATTTCGAACCTGAGC-TGATGTTTTCTGTTGCTTTATGCGG  578

Query  111  TCATGAATTCTGTACGGAGTGCGTGGAACGACATATAGAA  150
            |||||||||||||   ||||||||  ||||||||||||||
Sbjct  579  TCATGAATTCTGTGTTGAGTGCGTAAAACGACATATAGAA  618


> AT3G43750.1 | Symbols:  | RING/U-box protein with C6HC-type zinc 
finger domain | chr3:15646460-15647566 FORWARD LENGTH=1041
Length=1041

 Score =  110 bits (59),  Expect = 1e-23
 Identities = 73/80 (91%), Gaps = 0/80 (0%)
 Strand=Plus/Plus

Query  332  CTGCAAAGTTGCGTGGCATAGTAACTTGTCTTGCGACGATTACAAGAGATTGGGTCCAAA  391
            |||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct  840  CTGCAAAGTTCCGTGGCATAGTAACTTGTCATGCGATGATTACAAGAGATTGGGTCCAAA  899

Query  392  TCCTAGAGAAGATGTTATAA  411
            ||||| | || ||| |||||
Sbjct  900  TCCTACAAAAAATGATATAA  919


> AT3G45540.1 | Symbols:  | RING/U-box protein with C6HC-type zinc 
finger | chr3:16706312-16707649 REVERSE LENGTH=1047
Length=1047

 Score = 52.8 bits (28),  Expect = 2e-06
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  3    GGAAACAATAGTTTCTGAAATCAGCATA  30
            ||||||||||||||||||||||||||||
Sbjct  225  GGAAACAATAGTTTCTGAAATCAGCATA  252



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19453618863


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5