BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897475
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46570.1 | Symbols: | Glycosyl hydrolase superfamily protei... 1476 0.0
> AT3G46570.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr3:17145797-17146867 REVERSE LENGTH=1071
Length=1071
Score = 1476 bits (799), Expect = 0.0
Identities = 973/1057 (92%), Gaps = 12/1057 (1%)
Strand=Plus/Plus
Query 1 ATGTTGGGATCT-GATGTTGTTCCTCAACTTTTCTTCCTAATACTCACTCTCATCCTTCC 59
|||||||||||| || ||||||| |||||||| ||||||||| |||||||||||||||||
Sbjct 1 ATGTTGGGATCTAGA-GTTGTTCATCAACTTTACTTCCTAATTCTCACTCTCATCCTTCC 59
Query 60 CTTCTCCGCCGCATATCACGTCGGCGTAAACTACGGCACGGTGGCCAACAACCTCCCACC 119
||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 CTTCTCCGCTGCATATCAAGTCGGCGTAAACTACGGCACCGTGGCCAACAACCTCCCACC 119
Query 120 GCCTCACCAAGTCGTCAACTTCATCAAAACAAAAACAA-ACATCAACCACGTCAAAATCT 178
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 120 GCCTCACCAAGTCGTCAACTTCATCAAAACAAAAACAATA-ATCAACCACGTCAAAATCT 178
Query 179 TCGACACAAACCCCGACATCCTCGCCGCATTTTCCGGCATCACTGAAATCTCCCTCACCG 238
|||||||||||| ||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 179 TCGACACAAACCACGACATCCTCGCCGCATTTTCCGGCATTACAGGAATCTCCCTCACCG 238
Query 239 TCACAATCCCAAACTCCGACATCCTTTCCCTCTCCAAGCTTCCCAACGCACGTTCATGGC 298
|||| ||||||||||||| ||| |||| || ||||||||| ||||||||||||||||||
Sbjct 239 TCACCGTCCCAAACTCCGATATCATTTCTCTTTCCAAGCTTTCCAACGCACGTTCATGGC 298
Query 299 TCTCCAACCACCTCCTCCCTTTCCTCCCAACAACCTCAATCAGTTACATTGCTGTCGGAA 358
||||| || |||||||||| ||||||| |||||| |||||| ||||||||||||||||||
Sbjct 299 TCTCCGACAACCTCCTCCCCTTCCTCCTAACAACTTCAATCCGTTACATTGCTGTCGGAA 358
Query 359 ACGAAGTCATCGCCACATCCGACAAAACACTCATCACTCATCTTCTTCCCGCCATGGA-A 417
|||||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||| |
Sbjct 359 ACGAAGTCGTCGCCACATCCGACAAAACCCTCATCACTCATCTCCTTCCCGCTATGGAGA 418
Query 418 TCGCTTACGTTAGCATTACACCTTGCTAACGTCACT-GGTATCTTAGTCTCGACGCCTCA 476
||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 419 -CGCTTACGTTAGCATTACACCTTGCTAACGTCAGTAGG-ATCTTAGTCTCGACGCCTCA 476
Query 477 CTCGCTAGGTATCCTCTCGGGCTCTTCGGAGCCTCCTAGCTCCGGAAAGTTCCGTAATGG 536
|||||| ||||||||||| ||||| || ||||| ||||||||||||||||||||||| ||
Sbjct 477 CTCGCTCGGTATCCTCTCAGGCTCCTCCGAGCCACCTAGCTCCGGAAAGTTCCGTAAAGG 536
Query 537 CTACGACAAAGCCATCTTCACTCCAATCCTTGACTTCCACAACCGCACTAAGTCTCCTTT 596
|||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||
Sbjct 537 GTACGACAAAGCCATCTTCTCTCCAATCCTAGACTTCCACAACCGCACCAAGTCTCCTTT 596
Query 597 CATGGTTAACCCGTACCCATATTTCGGTTCCGGACCCGAAACACTAAACTACGCACTCTT 656
|||||||||||||| ||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 597 TATGGTTAACCCGTATCCATATTTCGGTTTCGGACCTGAAACGTTAAACTACGCACTCTT 656
Query 657 TAACTCCAACGAC-TACGTTT-TCGTTGACCCGGTTACGAAGATGAACTACACCAACATG 714
|||| | |||||| | || | | |||||||||||||||||| |||||||||||||||||
Sbjct 657 TAACACAAACGACGTT-GTATAT-GTTGACCCGGTTACGAAGTTGAACTACACCAACATG 714
Query 715 TTTGACGCTCAGCTTGATGCGGTATACTCCGCAATGAAACGAATCGGTTACGGTGACGTG 774
|| ||||||||||||||||| || |||||||||||||||||| | || ||||||||||||
Sbjct 715 TTCGACGCTCAGCTTGATGCTGTTTACTCCGCAATGAAACGATTTGGGTACGGTGACGTG 774
Query 775 GACATCGTCGTGGCTGAGACCGGTTGGCCCTCGGCTGGTGAACCGAACCAGACTGGCGTC 834
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct 775 GACATTGTTGTGGCTGAGACCGGTTGGCCTTCAGCTGGTGAACCGAACCAAACCGGCGTC 834
Query 835 GGTTTAGATTATGCGGCAGCTTACAATGGGAATCTTATAAAGCATGTGAATTCTGGTAAG 894
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 835 GGTTTAGATTATGCCGCAGCTTACAATGGGAACCTTATAAAGCATGTGAATTCTGGTAAG 894
Query 895 GGCACTCCACTGATGCCAAACCGGGTTTTCGAGACTTACATTTTTTCTCTCTTCAACGAA 954
||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 895 GGCACTCCATTGATGCCAAACCGGGTTTTCGAAACTTATGTTTTTTCTCTCTTCAACGAG 954
Query 955 AATCTCAAATCTTCGGTTTCTGAGCAAAACTTCGGTTTGTTTAAACCAGACTTCACCCAG 1014
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
Sbjct 955 AATCTCAAATCTTCGGTTTCAGAGCAAAACTTCGGTTTGTTTAAACCGGACTTCACCCCG 1014
Query 1015 GTTTATGATGTCGGTATCATGAAAACAAATAAGGTAT 1051
||||| |||||||||||||||||||||||||||||||
Sbjct 1015 GTTTACGATGTCGGTATCATGAAAACAAATAAGGTAT 1051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51640703116
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5