BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897507
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46810.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 929 0.0
> AT3G46810.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr3:17238236-17240623 REVERSE LENGTH=2388
Length=2388
Score = 929 bits (503), Expect = 0.0
Identities = 646/712 (91%), Gaps = 21/712 (3%)
Strand=Plus/Plus
Query 1 ATGGAAAAAGTGGTGCTACGGGTTCATGACCATCCTCTGTTACCCTTTGATCGCTTTTAT 60
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 92 ATGGAAAAAGTGGTGCTACGGGTTCATGACCATCCTTTGTTACCCTTTGAACGCTTTTAT 151
Query 61 TACGACCGTTGTGATGGTTGCTCGCTTAAAGGTTACTTTTATGGAGGCTACCGTTGCAAT 120
| | ||||||| || ||||| | | |||| |||||||||||||||||||||||||||
Sbjct 152 TTTGGCCGTTGTTCCGGGTGCTCACGTGAAGGCTACTTTTATGGAGGCTACCGTTGCAAT 211
Query 121 GAGTTGGCATGTTATGCGGTGTTCCATAAGGAGTGCGCTGAGTCCAAACCCGAGATCAGC 180
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 GAGTTGGCGTGTTTTGCGGTGTTCCATAAGGAGTGCGCTGAGTCCAAACCCGAGATCAGC 271
Query 181 CACCATGCCCATCCCAAGCATCTACTTAAGCTTGGCCAA-AGACGTGGTCGTTGTCATTT 239
||||||||||||||||||||||| |||||||||||| || |||||| |||||||||||
Sbjct 272 CACCATGCCCATCCCAAGCATCTGCTTAAGCTTGGC-AATAGACGTCAACGTTGTCATTT 330
Query 240 GTGTGAACGGCCGGTGGGAGTTGGTTATTTTTGTTCAATATGTGACTTTGGTATGCATTT 299
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 331 GTGTGAACGGCCGGTGGGAATTGGTTATTTTTGTTCGATATGTGACTTTGGTATGCATTT 390
Query 300 GGTTTGTGCAAAGATCCC-ACCACTCTCACTTCAGCCACAACTCTCTACTATTGAGAATT 358
||||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 391 GGTTTGTGCGAAG-TCCCCACCACTCTCACTTCAGCCACAACTCTCTAGTATTGAGAATT 449
Query 359 ACAAGGTGCATGAACATCCTCTTTCACCTTCCCAAACAGCATGGCTTGCAGAACCTGGCA 418
||||||||||||||||||||||| ||||| | |||||||||||||||||||| ||||||
Sbjct 450 ACAAGGTGCATGAACATCCTCTTAAACCTTTCAAAACAGCATGGCTTGCAGAAACTGGCA 509
Query 419 ATTGCAAAGGGTGTAACTACATTATCGGCATTGGAGATAAAGCTCCTTATTATGAATGTC 478
|||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||
Sbjct 510 ATTGCAAAGGGTGTAACTACATTATCGGCAATGGAGATAGCGCTCCTTTTTATGAATGTC 569
Query 479 ATCGGTGTAATCTCTACATTCAT-TCGACTTGCCTTGAGCTCTTTTTCACCACAGATGCA 537
||||||||| || ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 570 GTCGGTGTAAACTTTACATTCATGT-GACTTGCCTTGAGCTCTTTTTCACCACAGATGCA 628
Query 538 CACCACAACTCTCATCTCAAACACCCTCTCAAATATATCAAAAGTGGGCCCCCGAGTTAC 597
| |||||||||||||||||||||||||||||||||| |||||| ||| |||||||| |||
Sbjct 629 CGCCACAACTCTCATCTCAAACACCCTCTCAAATATCTCAAAAATGGACCCCCGAGCTAC 688
Query 598 GCCGACCATAGATGCCTTCTTTGCGGAAGACAGTTTCAAGATCAACTTGAAGAGTTACAA 657
|||||||||| ||||||||||||||||||| ||||| ||||||||| ||| | |
Sbjct 689 GCCGACCATAAATGCCTTCTTTGCGGAAGAGAGTTTGAAGATCAAC---AAG-G---C-- 739
Query 658 CTACACCAAAAATATGAGCTTTATCATTGTGAAGTTTGTAACTTCAGCATAT 709
| | | ||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 740 C-A-A--AAA--TATGAGCTTTATCACTGTGATGTTTGTAACTTCAGCATAT 785
Score = 287 bits (155), Expect = 2e-76
Identities = 214/242 (88%), Gaps = 6/242 (2%)
Strand=Plus/Plus
Query 827 ACTTCTCATATCATATGCCAGGACCATTGTCAGCGGAAGTAAACTCATACAAAATGGTA- 885
||||||| |||||||||||||||||||| ||| | | ||| | | |||||||||||||
Sbjct 1911 ACTTCTCCTATCATATGCCAGGACCATTATCAACCGTAGTTAGCGAATACAAAATGGTAC 1970
Query 886 ----C-CGGTAGTAGGCTCATACAAAGTGGTACCGAACACTTCGACTTATAGATCATTTT 940
| |||||||| ||| |||||||||||| || |||||||||| || |||| || |||
Sbjct 1971 CGCCCGCGGTAGTAAGCTTATACAAAGTGGTGCCAAACACTTCGATTTGTAGACCACTTT 2030
Query 941 GCTCCAGGTGTCACACTAGATGCAAACTCCCTTGCATTCTTGAAGCCTCCGAGGATGGTG 1000
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2031 GCTCCAGGTGTCACACTAGATGCAAACTCCCTTGCATTCTTGAAACCTCCGAGGATGGTG 2090
Query 1001 TTGATGTTTACTTTTGTTCTAATGATTGTTATAAAAATCCTTGGGAATCATCGTATTATT 1060
|| |||||||||||||||||||||||||| |||||||||||||||| || ||||||||||
Sbjct 2091 TTAATGTTTACTTTTGTTCTAATGATTGTCATAAAAATCCTTGGGAGTCGTCGTATTATT 2150
Query 1061 AG 1062
||
Sbjct 2151 AG 2152
Score = 161 bits (87), Expect = 1e-38
Identities = 100/106 (94%), Gaps = 1/106 (1%)
Strand=Plus/Plus
Query 710 TTATGGATGTACGATGTGGTTCGATATTTGAACCATTTGTTCATGAAAGTCATCCACATC 769
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1548 TTATGGATATACGATGTGGTTCGATATTTGAACCATTTGTTCATGAAAGGCATCCACATC 1607
Query 770 CTTTATACTACAAGTTCTACACCTTTTTGGCGGATGCGAAGT-CGA 814
|||||||||||||||||| |||||||| ||||| |||||||| |||
Sbjct 1608 CTTTATACTACAAGTTCTTCACCTTTTCGGCGGTTGCGAAGTGCGA 1653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5