BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897508
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46820.1 | Symbols: TOPP5 | type one serine/threonine protei... 1546 0.0
AT5G59160.1 | Symbols: TOPP2, PPO | type one serine/threonine p... 1092 0.0
AT2G39840.1 | Symbols: TOPP4 | type one serine/threonine protei... 440 1e-122
> AT3G46820.1 | Symbols: TOPP5 | type one serine/threonine protein
phosphatase 5 | chr3:17241781-17244277 REVERSE LENGTH=1583
Length=1583
Score = 1546 bits (837), Expect = 0.0
Identities = 905/939 (96%), Gaps = 0/939 (0%)
Strand=Plus/Plus
Query 1 ATGGCGCAACAAGGGCAGGGAAGCATGGACCCTGCTGTTCTCGACGACATCATTCGACGT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 286 ATGGCGCAACAAGGGCAGGGAAGCATGGACCCTGCTGTTCTCGACGACATCATTCGTCGT 345
Query 61 TTACTTGATTACAGAAACCCTAAAGCTGGGACCAAACAAGCTATGCTCAACGATTCTGAG 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 TTACTTGATTACCGAAACCCTAAAGCTGGGACCAAACAAGCTATGCTCAACGATTCTGAG 405
Query 121 ATCCGACAGCTTTGTTTTGTCTCCAGAGAGATATTTCTTCAACAGCCTTGTCTTCTTGAG 180
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 406 ATCCGACAGCTTTGCTTTGTCTCTAGAGAGATATTTCTTCAACAGCCTTGTCTTCTTGAG 465
Query 181 CTCGCTGCCCCTGTTAAGATCTGTGGTGATATTCACGGTCAATACTCAGATTTATTGAGG 240
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 466 CTCGCTGCCCCTGTTAAGATCTGCGGTGATATTCATGGTCAATACTCAGATTTATTGAGG 525
Query 241 CTTTTCGAGTATGGAGGTTTCCCTCCTGCAGCAAACTACTTATTCTTAGGAGATTACGTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 CTTTTCGAGTATGGAGGTTTCCCTCCTGCAGCAAACTACTTATTCTTAGGAGATTACGTT 585
Query 301 GACCGTGGGAAGCAGAGTATGGAGACTATTTGTCTTCTGCTTGCTTACAAGATCAAATAC 360
||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 586 GACCGCGGAAAGCAGAGTTTGGAGACTATTTGTCTTCTGCTTGCTTACAAGATCAAATAC 645
Query 361 CCCGAAAACTTTTTTCTTTTAAGAGGAAACCATGAGTGTGCATCTATTAACAGAATCTAC 420
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 646 CCTGAAAACTTTTTTCTCTTAAGAGGAAACCATGAGTGTGCATCTATTAACAGAATTTAC 705
Query 421 GGATTCTATGACGAATGTAAACGAAGGTTCAATGTGAAGCTCTGGAAAGTATTTACAGAC 480
|||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct 706 GGATTCTATGACGAATGTAAACGAAGATTCAACGTGAAGCTCTGGAAAGTGTTTACCGAT 765
Query 481 ACTTTTAACTGTCTCCCTGTGGCTGCTGTCATAGACGAAAAGATCCTTTGTATGCACGGT 540
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 766 ACTTTTAACTGTCTCCCTGTGGCTGCTGTCATAGATGAAAAGATACTTTGTATGCATGGT 825
Query 541 GGACTATCTCCCGATTTGATCAATGTGGAACAGATTAAGAACATAGAGCGTCCAATTGAT 600
||||||||||| || ||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 826 GGACTATCTCCTGAGTTGATCAATGTGGAACAAATTAAGAACATAGAGCGTCCAACTGAT 885
Query 601 GTTCCAGACTCTGGTTTGCTCTGTGACCTTCTTTGGTCTGATCCTAGTAAAGACATCAAA 660
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 886 GTTCCAGACGCTGGTTTGCTCTGTGACCTTCTTTGGTCTGATCCTAGTAAAGATGTCAAA 945
Query 661 GGCTGGGGGATGAATGATCGTGGTGTCTCTTACACTTTTGGCGCTGACAAAGTTGCTGAG 720
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 946 GGCTGGGGGATGAATGATCGTGGTGTCTCCTACACTTTTGGTGCTGACAAAGTTGCTGAG 1005
Query 721 TTTCTAATAAAAAATGATATGGATTTAGTCTGTCGTGCCCACCAGGTTGTGGAGGATGGG 780
||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1006 TTTTTAATAAAGAATGATATGGATTTAGTCTGTCGTGCCCACCAGGTTGTAGAGGATGGG 1065
Query 781 TATGAGTTCTTTGCTGATAGACAGCTTGTGACTATGTTTTCTGCTCCAAACTACTGTGGT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TATGAGTTCTTTGCTGATAGACAGCTTGTGACTATGTTTTCTGCTCCAAACTACTGTGGT 1125
Query 841 GAATTTGACAATGCGGGTGCATTGATGAGTGTGGACGAAAGTTTAATGTGCTCTTTCCAA 900
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1126 GAATTTGACAATGCGGGTGCATTGATGAGTGTCGACGAAAGTTTAATGTGCTCTTTCCAA 1185
Query 901 ATTCTTAAGCCTGTGGATCGCAGGTCGCGGTTCTTTTGA 939
|||||||||||||||||||| ||||||||||||||||||
Sbjct 1186 ATTCTTAAGCCTGTGGATCGGAGGTCGCGGTTCTTTTGA 1224
> AT5G59160.1 | Symbols: TOPP2, PPO | type one serine/threonine
protein phosphatase 2 | chr5:23879349-23881688 FORWARD LENGTH=1468
Length=1468
Score = 1092 bits (591), Expect = 0.0
Identities = 834/950 (88%), Gaps = 22/950 (2%)
Strand=Plus/Plus
Query 1 ATGGCGCAACAAGGGCAGGGAAGCATGGACCCTGCTGTTCTCGACGACATCATTCGACGT 60
||||||||||||||||||||||||||||||||||| | |||||| || |||||||| |||
Sbjct 219 ATGGCGCAACAAGGGCAGGGAAGCATGGACCCTGCCGCTCTCGATGATATCATTCGTCGT 278
Query 61 TTACTT-GATTACAGAAACCCTAAAG-CTGGGACCAAACAAGCTATGCTCAACGATTCTG 118
|| || ||||||||||||||| ||| |||| |||||||| |||||||||||||| ||||
Sbjct 279 TT-GTTGGATTACAGAAACCCT-AAGCCTGGTACCAAACAGGCTATGCTCAACGAGTCTG 336
Query 119 AGATCCGACAGCTTTGTTTTGTCTCCAGAGAGATATTTCTTCAACAGCCTTGTCTTCTTG 178
||||||| |||||||| | ||||| |||||||| ||||||||||||||| |||||||
Sbjct 337 AGATCCGTCAGCTTTGCATCGTCTCTAGAGAGATTTTTCTTCAACAGCCTAACCTTCTTG 396
Query 179 AGCTCGCTGCCCCTGTTAAGATCTGTGGTGATATTCACGGTCAATACTCAGATTTATTGA 238
|||||| || ||| | |||||||| ||||||||||| || |||||||||||| ||||||
Sbjct 397 AGCTCGAAGCTCCTATCAAGATCTGCGGTGATATTCATGGACAATACTCAGATCTATTGA 456
Query 239 GGCT-TTTCGAGTATGGAGGTTTCCCTCCTGCAGCAAACTACTTATTCTTAGGAGATTAC 297
|||| ||| ||||||||||| ||||| ||| |||| ||||| ||||||||||||||||||
Sbjct 457 GGCTGTTT-GAGTATGGAGGCTTCCCACCTACAGCTAACTATTTATTCTTAGGAGATTAC 515
Query 298 GTTGACCGTGGG-AAGCAGAGTATGGAGACTATTTGTCTTCTGCTTGCTTACAAGATCAA 356
|| ||| | ||| ||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 516 GTAGACAG-GGGCAAGCAGAGTTTGGAGACTATTTGTCTTCTGCTTGCTTACAAAATCAA 574
Query 357 ATACCCCGAAAACTTTTTTCTTTTAAGAGGAAACCATGAGTGTGCATCTATTAACAGAAT 416
|||||| || |||||||||||| ||||||||||||| || ||||| ||||||||||||||
Sbjct 575 ATACCCTGAGAACTTTTTTCTTCTAAGAGGAAACCACGAATGTGCTTCTATTAACAGAAT 634
Query 417 CTACGGATTCTATGACGAATGTAAACGAAGGTTCAATGTGAAG-CTCTGGAAAGTATTTA 475
||| ||||||||||| ||||||||||| | |||| |||| || ||||||||||| ||||
Sbjct 635 CTATGGATTCTATGATGAATGTAAACGTCGATTCAGTGTG-AGACTCTGGAAAGTGTTTA 693
Query 476 CAGACACTTTTAACTGTCTCCCTGTGGCTGCTGTCATAGACGAAAAGATCCTT-TGTATG 534
|||| ||||||||||||||||||| |||||||| |||||||| ||||| || ||||||
Sbjct 694 CAGATTCTTTTAACTGTCTCCCTGTTGCTGCTGTTATAGACGATAAGAT-ATTATGTATG 752
Query 535 CACGGTGGACTATCTCCCGATTTGATCAATGTGGAACAGATTAAGAACA-TAGAGCGTCC 593
|||||||| || ||||||||||||| ||| ||||||||||||||||||| || |||| ||
Sbjct 753 CACGGTGGCCTTTCTCCCGATTTGACCAACGTGGAACAGATTAAGAACATTA-AGCGACC 811
Query 594 AATTGATGTTCCAGACTCTGGTTTGCTCTGTGACCTTCTTTGGTCTGATCCTAGTAAAGA 653
| ||||||||| |||||||||||||||||||| || |||||||||||||| || |||||
Sbjct 812 TACTGATGTTCCTGACTCTGGTTTGCTCTGTGATCTGCTTTGGTCTGATCCAAGCAAAGA 871
Query 654 CATCAAAGGCTGGGGGATGAATGATCGTGGTGTCTCTTACACTTTTGGCGCTGACAAAGT 713
||||||| |||||||||||||| ||||| ||||||||||| |||||| ||||||||||
Sbjct 872 TGTCAAAGGTTGGGGGATGAATGACCGTGGAGTCTCTTACACGTTTGGCCCTGACAAAGT 931
Query 714 TGCTGAGTTTCTAATAAAAAATGATATGGAT-TTAGTCTGTCGTGCCCACCAGGTTGTGG 772
|| |||||||||||||| |||||||||||| | | |||| ||||||||||||||||| |
Sbjct 932 CGCGGAGTTTCTAATAAAGAATGATATGGATCTCA-TCTGCCGTGCCCACCAGGTTGTAG 990
Query 773 AGGATGGGTATGAGTTCTTT-GCTGATAGACAGCTTGTGACTATGTTTTCTGCTCCAAAC 831
||||||| |||||||| ||| || |||||||||||||| || || ||||||||||| |||
Sbjct 991 AGGATGGATATGAGTT-TTTCGCCGATAGACAGCTTGTTACGATATTTTCTGCTCCCAAC 1049
Query 832 TACTGTGGTGAATTTGACAATGCGGGTGCAT-TGATGAGTGTGGACGAAAGTTTAATGTG 890
||||||||||||||||||||||| ||||| | |||||||||| || ||||||||||||||
Sbjct 1050 TACTGTGGTGAATTTGACAATGCTGGTGC-TATGATGAGTGTTGATGAAAGTTTAATGTG 1108
Query 891 CTCTTTCCAAATTCTTAAGCCTG-TGGATCGCAGGTCGCGGTTCTTTTGA 939
||||||||||||||||||||||| || |||| | | | |||||||| |||
Sbjct 1109 CTCTTTCCAAATTCTTAAGCCTGCTG-ATCGAAAGCCCCGGTTCTTATGA 1157
> AT2G39840.1 | Symbols: TOPP4 | type one serine/threonine protein
phosphatase 4 | chr2:16627258-16629289 FORWARD LENGTH=1443
Length=1443
Score = 440 bits (238), Expect = 1e-122
Identities = 617/793 (78%), Gaps = 54/793 (7%)
Strand=Plus/Plus
Query 147 AGAGATA-TTT-CTTCAACAGCCTTGTCTT-CTTGAGCTCGCTGC-CCCTGTTAAGATCT 202
||||||| ||| ||||| || || | || |||||||| | || ||| | || ||||
Sbjct 329 AGAGATATTTTCCTTCAGCAACCCAAT-TTACTTGAGCTTGAGGCTCCC-ATCAAAATCT 386
Query 203 GTGGTGATATTCACGGTCAATACTCA--GATTTATTGAGGCT-TTTCGAGTATGGAGGTT 259
||||||| || || || ||||| | | ||||| |||||||| ||| |||||||| || |
Sbjct 387 GTGGTGACATACATGGGCAATA-T-AGTGATTTGTTGAGGCTATTT-GAGTATGGTGGCT 443
Query 260 TCCCTCCT-GCAGCAAACTACT-TA-TTCTTAGGAGATTACGTTGACCGTGGGAAGCAGA 316
|||||||| | || || || | || ||||| || || || || ||| | || || ||||
Sbjct 444 TCCCTCCTAG-TGCCAATTA-TCTATTTCTT-GGGGACTATGTGGACAGAGGCAAACAGA 500
Query 317 GTATGGAGACTATTTGTCTTC-TGCTTGCTTACAAGATCAAATACCCCGAAAACTTTTTT 375
|| | || || || |||| || | || |||||||||||||||||||| | |||||||||
Sbjct 501 GTCTTGAAACAATATGTC-TCTTACTAGCTTACAAGATCAAATACCCTGGCAACTTTTTT 559
Query 376 CTTTTAAGAGGAAACCATGAGTGTGCATCTATTAACAGAATCTACGGATTCTATGACGAA 435
|| |||| |||||||| || ||||| ||||| || || || || ||||| ||||| ||
Sbjct 560 CTACTAAGGGGAAACCACGAATGTGCTTCTATCAATAGGATATATGGATTTTATGATGAG 619
Query 436 TGTAAACGAAGGTTCAATGTGA-AGCTCTGGAAAGTATTTACAGACACTTTTAACTGTCT 494
|||||| | ||||||||||||| || | ||||| || ||||| || ||||||||| ||
Sbjct 620 TGTAAAAGGAGGTTCAATGTGAGAG-TATGGAAGGTTTTTACTGATTGTTTTAACTGCCT 678
Query 495 CCCTGTGGCTGCTG-TCATAGACGA-AAAGATCCTT-TGTATGCACGGTGGACTATCTCC 551
||||| || || | | ||||| || ||| || || ||||||||||||||||| || ||
Sbjct 679 TCCTGTTGCGGC-GCTTATAGATGACAAA-AT-ATTGTGTATGCACGGTGGACTTTCGCC 735
Query 552 CGAT-TTGATCAATGTGGAACAGATTAAG-AACATAG-AGCGTCCAATTGATG-TTCC-- 605
||| |||| | || |||| ||||| || ||| | | | | |||| | ||| ||||
Sbjct 736 GGATCTTGA-CCATTTGGATGAGATT-AGAAAC-TTGCCGAGACCAACT-ATGATTCCGG 791
Query 606 AGACTCTGGTTTGCTCTGTGACCTT-CTTTGGTCTGATCCTAGTAAAGACATCAAAGGCT 664
| || | || || |||||||| || || |||||||||||| | ||||| | ||||| |
Sbjct 792 ATAC-CGGGCTT-CTCTGTGA-TTTGCTCTGGTCTGATCCTGGGAAAGATGTTAAAGGAT 848
Query 665 GGGGGATGAATGATCGTGGTGTCTCTTACACTTTTGG-CGCTGACAAAGTTGCTGAGTTT 723
|||| ||||||||| | ||||| || ||||| ||||| | | || |||||| | ||||||
Sbjct 849 GGGGAATGAATGATAGAGGTGTTTCATACACCTTTGGTC-CAGATAAAGTTTCCGAGTTT 907
Query 724 CTAATAAAAAATGATATGGAT-TTAGTCTGTCGTGCCCACCAGGTTGTGGAGGATGGGTA 782
|| | ||| ||||| | ||| || || ||||||||||| ||||| ||||||||||||||
Sbjct 908 CTTACGAAACATGATTTAGATCTT-GTGTGTCGTGCCCATCAGGTCGTGGAGGATGGGTA 966
Query 783 TGAGTTCTTTGCTGATAGACAGCTTGTGACTATGTTTTCTGCTCCAAACTACTGTGGTGA 842
||||||||||||||||||||| |||||||| ||||||| ||||| ||||||||||||||
Sbjct 967 TGAGTTCTTTGCTGATAGACAACTTGTGACGGTGTTTTCAGCTCCTAACTACTGTGGTGA 1026
Query 843 ATTTGACAATGCGGGTGC-ATTGATGAGTGTGGACGA-AAGTTTAATGTGCTC-TTTCCA 899
|||||| ||||| ||||| || |||||| |||||||| || ||| ||||||| |||| |
Sbjct 1027 ATTTGATAATGCTGGTGCGAT-GATGAGCGTGGACGAGAACCTTA-TGTGCTCGTTTC-A 1083
Query 900 AATTCTT-AAGCC 911
||| || |||||
Sbjct 1084 GATT-TTGAAGCC 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45914010358
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5