BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897522

Length=879
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G46910.1 | Symbols:  | Cullin family protein | chr3:17278636...   556    9e-158
  AT3G46911.1 | Symbols:  | pseudogene of CUL4 (protein binding /...  89.8    4e-17 


> AT3G46910.1 | Symbols:  | Cullin family protein | chr3:17278636-17279652 
FORWARD LENGTH=744
Length=744

 Score =  556 bits (301),  Expect = 9e-158
 Identities = 471/550 (86%), Gaps = 23/550 (4%)
 Strand=Plus/Plus

Query  70   ATGAAGACTACTCCTGGTTTGCGGGTTTTCAAGCCCATCATCCCTGATATACCTAAA-CG  128
            ||||||||||||||||||||| || |||||||||||||||||||| | | ||||||| ||
Sbjct  1    ATGAAGACTACTCCTGGTTTGAGGATTTTCAAGCCCATCATCCCTCACACACCTAAACCG  60

Query  129  AGACCCTAAAATTTATTTGGATGATGCTTGGACAAAGCTAAAGCCAGCTATAAGAACCAT  188
             ||| ||| ||||||| |||| ||||||||||||| |||||||||||| |||||| ||||
Sbjct  61   -GACTCTAGAATTTATGTGGAAGATGCTTGGACAATGCTAAAGCCAGCCATAAGAGCCAT  119

Query  189  CTTCCTCGATGAGCCACAAGATTAT-CACTGCTCTGAGATTTTCAACGCTGTTCATAAAG  247
            ||||||||| ||||||||||||| | || |||  || | ||||||| |||||| ||||| 
Sbjct  120  CTTCCTCGACGAGCCACAAGATTTTGCA-TGCAGTGGGCTTTTCAATGCTGTTAATAAAT  178

Query  248  CATGGTGGT-CAAAGTCATCAGGAGAAACCCTTTACAAGCTGATCTTGGAGGAGTGTGAG  306
            |||||| ||  |||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct  179  CATGGT-GTGAAAAGTCTTCAGGAGAAGCCCTTTACAAGCTGATCTTGGAGGAGTGTGAG  237

Query  307  ATATACATCTCTGCAGCTATACAGTATTTCGAATCGCATTGCGATGATG-ATCCCTCTGT  365
            ||||||||||||||||| ||||||| ||| |||||||| |||||| | | |||||||| |
Sbjct  238  ATATACATCTCTGCAGCCATACAGTCTTTAGAATCGCAATGCGAT-ACGGATCCCTCTCT  296

Query  366  TTTCCTGC-CACTCATGGAGAATTGTTGCCTGGAGTTTCGCCGCAAGTTGCAGGATCTCT  424
            |||||| | ||||| ||||||| ||||| || || |||||||||||||| |||  |||||
Sbjct  297  TTTCCT-CTCACTCTTGGAGAAGTGTTGGCTAGACTTTCGCCGCAAGTTACAGTTTCTCT  355

Query  425  GTAGCATTGC-G-TA-TGAAGGTCATACAGTTGGTCTGAAA-TCATTGTGGGACTTGGGT  480
            |||||||||| | |  ||||||||| || || ||||  | | ||| ||||||||||||||
Sbjct  356  GTAGCATTGCCGGTGGTGAAGGTCAGACCGTCGGTCC-ACACTCAGTGTGGGACTTGGGT  414

Query  481  ATTGAGCTTT-TCCCCAAGCATCTCTGCTTAGCCTCT-AAAGTTCGTGACAAGCTTCTTT  538
            | |||||||| |||| |||||||||| || |||| |  ||||||||||||||||||||||
Sbjct  415  AGTGAGCTTTCTCCC-AAGCATCTCTTCTCAGCC-CAGAAAGTTCGTGACAAGCTTCTTT  472

Query  539  CCATCAA-CTTA-AACCTCATTAGAGATCAAAGATTAGGCAAGGCTGTTGACACGACTCA  596
            ||||||  || | ||| |||||||||||||||||| |  || | ||||||||| ||||||
Sbjct  473  CCATCATTCT-ACAAC-TCATTAGAGATCAAAGATCATTCATGTCTGTTGACATGACTCA  530

Query  597  GCTAAAGAAT  606
            ||||||||||
Sbjct  531  GCTAAAGAAT  540


 Score =  171 bits (92),  Expect = 1e-41
 Identities = 149/176 (85%), Gaps = 6/176 (3%)
 Strand=Plus/Plus

Query  581  CTGTTGACACGACTCAGCTAAAGAATCTTTGGGTTTTGTTGCATGGGCCATG-GT-TCTA  638
            ||||| ||| |||||||||||| |||||| ||| ||||||  || || || |  | ||||
Sbjct  560  CTGTTCACATGACTCAGCTAAACAATCTTAGGGGTTTGTTTTAT-GGACA-GTCTCTCTA  617

Query  639  CAAGTCGGGCTTCTTCGAGAAGCCTTTTATGGACTGCGCTGTTGAGTTTTACTCAGCAGA  698
            |||||||  ||||||| |||| || ||||| |||||||||||||||||||||||||||||
Sbjct  618  CAAGTCGCCCTTCTTCAAGAAACCCTTTATCGACTGCGCTGTTGAGTTTTACTCAGCAGA  677

Query  699  ATCACTGCAGTTCAAGGAGCAGTCCGACATTCCCCAT-TATTTGAAGCATGTCGAG  753
            | || ||||||||||||||||||| |||||||| | | |||||||| | |||||||
Sbjct  678  AGCAATGCAGTTCAAGGAGCAGTCAGACATTCCAC-TGTATTTGAAACGTGTCGAG  732


> AT3G46911.1 | Symbols:  | pseudogene of CUL4 (protein binding 
/ ubiquitin-protein ligase) | chr3:17279711-17280176 FORWARD 
LENGTH=393
Length=393

 Score = 89.8 bits (48),  Expect = 4e-17
 Identities = 55/58 (95%), Gaps = 2/58 (3%)
 Strand=Plus/Plus

Query  823  ATGGAGGCTGTTGAGAGAATACTTCT-AAGGGATCATGTTTCTGTCATTCTTGAAAAG  879
            ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct  1    ATGGAAGCTGTTGAGAGAATACTTCTCAA-GGATCATGTTTCTGTCATTCTTGAAAAG  57



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42899961538


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5