BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897523

Length=708
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39270.1 | Symbols:  | P-loop containing nucleoside triphosp...   771    0.0  


> AT2G39270.1 | Symbols:  | P-loop containing nucleoside triphosphate 
hydrolases superfamily protein | chr2:16399972-16401671 
FORWARD LENGTH=1162
Length=1162

 Score =  771 bits (417),  Expect = 0.0
 Identities = 480/510 (94%), Gaps = 6/510 (1%)
 Strand=Plus/Plus

Query  10   GAGGCCGCGTCTCAGCTCGAGAAGTCTTCCTCTACGTCCACGTCTCCGTCTCCATACAAA  69
            ||||| ||| ||||||||| ||||||||| ||||||| ||      ||||||||||||||
Sbjct  141  GAGGCTGCGGCTCAGCTCGGGAAGTCTTCGTCTACGT-CA-----ACGTCTCCATACAAA  194

Query  70   GGCAGAAATTTCCACTGGGTGTTTCTTGGATGTCCTGGTGTTGGTAAAGGAACCTATGCC  129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  195  GGCAGAAATTTCCACTGGGTGTTTCTTGGATGTCCTGGTGTTGGTAAAGGAACCTATGCC  254

Query  130  TCTCGTCTCTCTTCTCTCCTCGGCGTTCCTCATATTGCCACTGGTGATCTCGTTCGTGAA  189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  255  TCTCGTCTCTCTTCTCTCCTCGGCGTTCCTCATATTGCCACTGGTGATCTCGTTCGTGAA  314

Query  190  GAGctctcctcctctggcctcctctcctctcAGCTGAAGGAGCTTGTTAACCATGGGAAA  249
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  315  GAGCTCTCCTCCTCTGGCCTCCTCTCCTCTCAGCTCAAGGAGCTTGTTAACCATGGAAAA  374

Query  250  TTGGTTCCTGATGAATTCATTATAAGTTTGTTATCAAAGCGGCTCCAAGCTGGCAAAGAG  309
             | ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| 
Sbjct  375  CTAGTTCCTGATGAATTCATAATAAGTTTGTTATCAAAGCGTCTCCAAGCTGGCAAAGAC  434

Query  310  AATGGTGAATCTGGTTACATTCTTGATGGTTTTCCACGAACCGTGACACAAGCGGATACA  369
            || ||||||||||| ||||||||||||||||||||||| |||||||| |||||||| | |
Sbjct  435  AAGGGTGAATCTGGATACATTCTTGATGGTTTTCCACGCACCGTGACTCAAGCGGAAATA  494

Query  370  CTGGAGGGAGTAACTAATATCGATCTGGTGATCAACCTGAAGCTTCGAGAAGAGGCATTA  429
            |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| 
Sbjct  495  CTGGAGGGAGTAACTAATATCGATCTGGTGATTAACCTGAAGCTACGAGAAGAGGCATTG  554

Query  430  CTTGCGAAATGTTTAGGAAGAAGAATTTGCAGCGAGTGTGGTGCAAACTATAACGTTGCG  489
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct  555  CTTGCGAAATGTTTAGGAAGAAGAATTTGCAGCGAGTGTGGTGGAAACTATAACGTTGCC  614

Query  490  TGCATTGATATCGAAGGTGATGATGATACT  519
            |||||||||||| |||||||||||||||||
Sbjct  615  TGCATTGATATCAAAGGTGATGATGATACT  644



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34309922401


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5