BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897537
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23780.1 | Symbols: NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | nucle... 106 6e-22
AT3G18090.1 | Symbols: NRPD2B | nuclear RNA polymerase D2B | ch... 106 6e-22
> AT3G23780.1 | Symbols: NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | nuclear
RNA polymerase D2A | chr3:8567731-8574190 REVERSE LENGTH=3955
Length=3955
Score = 106 bits (57), Expect = 6e-22
Identities = 64/67 (96%), Gaps = 1/67 (1%)
Strand=Plus/Minus
Query 1 ATGTCTTCAAAAGTGGCTTCTG-GGATAGAACAGCTGCTGGGACAGCGTATCGCAGCGGA 59
||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2462 ATGTCTTGAACAGTGGCTTCTGAGGATAGAACAGCTGCTGGGACAGCGTATCGCAGCGGA 2403
Query 60 TGTTAGG 66
|||||||
Sbjct 2402 TGTTAGG 2396
> AT3G18090.1 | Symbols: NRPD2B | nuclear RNA polymerase D2B |
chr3:6194564-6200237 FORWARD LENGTH=3715
Length=3715
Score = 106 bits (57), Expect = 6e-22
Identities = 64/67 (96%), Gaps = 1/67 (1%)
Strand=Plus/Minus
Query 1 ATGTCTTCAAAAGTGGCTTCT-GGGATAGAACAGCTGCTGGGACAGCGTATCGCAGCGGA 59
||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 2426 ATGTCTTGAAAAGTGGCTTTTGGGGATAGAACAGCTGCTGGGACAGCGTATCGCAGCGGA 2367
Query 60 TGTTAGG 66
|||||||
Sbjct 2366 TGTTAGG 2360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60290854545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5