BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897538
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46910.1 | Symbols: | Cullin family protein | chr3:17278636... 540 1e-152
AT3G46911.1 | Symbols: | pseudogene of CUL4 (protein binding /... 444 1e-123
> AT3G46910.1 | Symbols: | Cullin family protein | chr3:17278636-17279652
FORWARD LENGTH=744
Length=744
Score = 540 bits (292), Expect = 1e-152
Identities = 465/547 (85%), Gaps = 17/547 (3%)
Strand=Plus/Plus
Query 226 ATGAAGAGTACTCCTGGTTTGCGGGTTTTCAAGCCCATCATCCCTGATATACCTAAACCA 285
||||||| ||||||||||||| || |||||||||||||||||||| | | |||||||||
Sbjct 1 ATGAAGACTACTCCTGGTTTGAGGATTTTCAAGCCCATCATCCCTCACACACCTAAACCG 60
Query 286 GACCCTAAAATCTATTTGGATGATGCTTGGACAAAGCTAAAACCAGCTATAAGAACCATC 345
||| ||| ||| ||| |||| ||||||||||||| |||||| ||||| |||||| |||||
Sbjct 61 GACTCTAGAATTTATGTGGAAGATGCTTGGACAATGCTAAAGCCAGCCATAAGAGCCATC 120
Query 346 TTCCTCGATGAGGCACAAGATTTT-CACTGCTCTGAGATTTTCAACGCTGTTCGTAAAGC 404
|||||||| ||| ||||||||||| || ||| || | ||||||| |||||| |||| |
Sbjct 121 TTCCTCGACGAGCCACAAGATTTTGCA-TGCAGTGGGCTTTTCAATGCTGTTAATAAATC 179
Query 405 ATGGTGGT-CAAAGTCATCAGGAGAAACCCTTTACAAGCTGATCTTGGAGGAGTGTGAGA 463
||||| || |||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 180 ATGGT-GTGAAAAGTCTTCAGGAGAAGCCCTTTACAAGCTGATCTTGGAGGAGTGTGAGA 238
Query 464 TATACATCTCTGCAGCTATACAGTCTTTAGAATCGCATTGCGATGATG-ATCCCTCTGTT 522
|||||||||||||||| |||||||||||||||||||| |||||| | | |||||||| ||
Sbjct 239 TATACATCTCTGCAGCCATACAGTCTTTAGAATCGCAATGCGAT-ACGGATCCCTCTCTT 297
Query 523 TTCCTGC-CACGCATAGAGAATTGTTGCCTAGAGTTTCGCCGCAAGTTGCAGGATCTCTG 581
||||| | ||| | | ||||| ||||| ||||| |||||||||||||| ||| ||||||
Sbjct 298 TTCCT-CTCACTCTTGGAGAAGTGTTGGCTAGACTTTCGCCGCAAGTTACAGTTTCTCTG 356
Query 582 TAGCATTGC-G-TA-TGAAGGTCATACAGTTGGTCTAAAATCATTGTCGGACTTGGGTAT 638
||||||||| | | ||||||||| || || |||| | | ||| ||| |||||||||||
Sbjct 357 TAGCATTGCCGGTGGTGAAGGTCAGACCGTCGGTCCACACTCAGTGTGGGACTTGGGTAG 416
Query 639 TGAGCTTT-TCCCCAAGCATCTCTGCTTAGCCTCT-AAAGTTCGTGACAAGCTTCTTTCC 696
|||||||| |||| |||||||||| || |||| | ||||||||||||||||||||||||
Sbjct 417 TGAGCTTTCTCCC-AAGCATCTCTTCTCAGCC-CAGAAAGTTCGTGACAAGCTTCTTTCC 474
Query 697 ATCAA-CTTAGACCTCATAAGAGATCAAAGATTAGGCAAGGCTGTTGACACGACTCAGCT 755
|||| || | | ||||| ||||||||||||| | || | ||||||||| |||||||||
Sbjct 475 ATCATTCT-ACAACTCATTAGAGATCAAAGATCATTCATGTCTGTTGACATGACTCAGCT 533
Query 756 AAAGAAT 762
|||||||
Sbjct 534 AAAGAAT 540
> AT3G46911.1 | Symbols: | pseudogene of CUL4 (protein binding
/ ubiquitin-protein ligase) | chr3:17279711-17280176 FORWARD
LENGTH=393
Length=393
Score = 444 bits (240), Expect = 1e-123
Identities = 315/350 (90%), Gaps = 9/350 (3%)
Strand=Plus/Plus
Query 979 ATGGAAGCTGTTGAGAGAATACTTCTGAGGGATCATGTTTCTGTCATTCTTGAAAAGGGT 1038
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGCTGTTGAGAGAATACTTCTCAAGGATCATGTTTCTGTCATTCTTGAAAAGGGT 60
Query 1039 TTTGTGAAGTTTATGGATGAGAGAAGCCATGATGACCTTAGTAGGATGTATCGT-T-TGT 1096
||||| |||||||||||||||||||||||||||||||||||||||||||| | | | |||
Sbjct 61 TTTGTCAAGTTTATGGATGAGAGAAGCCATGATGACCTTAGTAGGATGTA-C-TATATGT 118
Query 1097 TCTCT-AAGATGGACTTACTGGGGCAGTTGAACGATGCTTTGAACTCCTATATTTTGCAA 1155
||||| | | | |||||||| ||||| |||||||| ||||||||||| || || ||||
Sbjct 119 TCTCTGAGGCT-GACTTACTTGGGCATTTGAACGACGCTTTGAACTCTTACATCCGGCAA 177
Query 1156 ACCGGGCAGAAGATGTTAAAGGAAGACTC---ATCATTGGCGGAGTTGAAGAAATCTATT 1212
|||||||||||||| |||||||||||||| ||| |||| |||||||||||| ||| ||
Sbjct 178 ACCGGGCAGAAGATCTTAAAGGAAGACTCATTATCTTTGGAGGAGTTGAAGAACTCTGTT 237
Query 1213 GACAAGATTTGCCACACTTGTTTCTCAGAAGATGCTTTGTTGGAGAAGACAGCCAAACAA 1272
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 238 GACAAGATTTGCCTTACTTGTTTCTCAGAAGATGCTTCGTTGGAGAAGACAGCCAAACAA 297
Query 1273 TGTTTTAAGGATCTTGGTTTGCCTCGGGAGGAATCAGAAACCGAGTCTCT 1322
||||||||||||||||||||| || |||||||| || |||| ||||||||
Sbjct 298 TGTTTTAAGGATCTTGGTTTGGCTTGGGAGGAAACAAAAACAGAGTCTCT 347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67670334660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5