BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897564
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47170.1 | Symbols: | HXXXD-type acyl-transferase family pr... 2097 0.0
> AT3G47170.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr3:17368672-17370494 REVERSE LENGTH=1407
Length=1407
Score = 2097 bits (1135), Expect = 0.0
Identities = 1324/1414 (94%), Gaps = 17/1414 (1%)
Strand=Plus/Plus
Query 1 ATGCCAACCAGAGACAATTCATGTCCCTTTGTCGTTGAGAAATCAGAAGTGGTTCTTGTG 60
||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGCCAAGAAGCGACAATTCATGTCCCTTTGTCGTTGAGAAGTCAGAAGTGGTTCTTGTG 60
Query 61 AAACCCTCAAAGCCAACACCTGATGTCACTTTGTCTCTCTCTACCATTGACAACGATCCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAACCCTCAAAGCCAACACCTGATGTCACTTTGTCTCTCTCTACCATTGACAACGATCCT 120
Query 121 AACAACGAAGTCATCCTGGACATCCTATGCGTCTTCGCCCCAAACCCCTACGTTCAAGAT 180
||||||||||| |||||||||||||||||||||||| |||||||||| ||||||| ||||
Sbjct 121 AACAACGAAGTAATCCTGGACATCCTATGCGTCTTCTCCCCAAACCCATACGTTCGAGAT 180
Query 181 CACGCCGACTACCACCCGGCTTCTTTTATTCAACTCGCCCTCTCTAATGCCCTTGTCTAT 240
||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 CACACCAACTACCATCCGGCTTCTTTTATTCAACTCGCCCTCTCTAATGCCCTTGTATAT 240
Query 241 TATTACCCTCTCGCCGGAAAACTTCACCGGCTGACGAGCGACCAGACACTCCAATTAGAT 300
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 241 TATTACCCTCTCGCCGGAAAACTTCACCGACGGACGAGCGACCAGACACTCCAATTAGAT 300
Query 301 TGTACGGAAGGCGATGGAGTCCCCCTT-ATAAAGGCAACGGCCTCGTGctctctctcttc 359
|||||| ||||||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct 301 TGTACGCAAGGCGATGGAGTCCCC-TTGATAAAGGCAACGGCCTCGTGCACTCTCTCTTC 359
Query 360 tctcAATTACTTGGAGAGTGGTGATCACTTGGACGCAACCTACCAACTTGTTCCTTCACA 419
|||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||
Sbjct 360 TCTCAATTACTTGGAGAGTGGTAATCACTTGGAAGCAACATACCAACTTGTTCCTTCACA 419
Query 420 CGACACATTGAAAGGTTGTAATCTTGGGTACAGGCCTCTGGCTCTACAGGTCACTAAGTT 479
|||||| ||||||||||||||||||||||| |||||||| ||||||||| ||||||||||
Sbjct 420 CGACACTTTGAAAGGTTGTAATCTTGGGTATAGGCCTCTTGCTCTACAGATCACTAAGTT 479
Query 480 CACTTGTGGAGGAATGACTATTGGCT-TGGTTCATTCTCACACCGTTTGTGATGGTATTG 538
||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 480 CACATGTGGAGGAATGACTATTGGCTCTG-TTCATTCTCACACCGTTTGTGATGGTATTG 538
Query 539 G-ACTGGCTCAGTTTTCTCAAGCCATACTTGAGCTTGCCGCCGGGAA-AGCCCAACCCAC 596
| | |||||||||||||||||||||||||||| || |||||||| || ||||||||||||
Sbjct 539 GCA-TGGCTCAGTTTTCTCAAGCCATACTTGAACTGGCCGCCGG-AAGAGCCCAACCCAC 596
Query 597 GGTCATCCCCGTGTGGGACAGAGACAGGCTCACTTCTAACCAAATTAGTTCTCCATGTAA 656
|||||||||||| ||||||||| ||| | |||||||||||||||||||| ||| ||| ||
Sbjct 597 GGTCATCCCCGTCTGGGACAGACACATGATCACTTCTAACCAAATTAGTACTCTATGCAA 656
Query 657 GCTCGGTAACGACAAAAA-AGATCCAAAACTCGTTGATTTGGAGAAAGCTTGCTCTTCGC 715
|||||| ||||||||||| | ||||||||||||||||| ||||||||| ||| |||||||
Sbjct 657 GCTCGGGAACGACAAAAATA-ATCCAAAACTCGTTGATGTGGAGAAAGATTGTTCTTCGC 715
Query 716 CCGATACACCAACCGAAGACATGGTCCGTGAAATCCTGAACATTACATCCGAAGATATCA 775
||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 716 CCGATACACCAACGGAAGACATGGTCCGTGAAATTCTGAACATTACATCCGAAGACATCA 775
Query 776 CTAAACTCAAGAACATAAGTATCGAAGATGAGAACCTTGCCAATGAGAACGAGAAGAACA 835
|||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||
Sbjct 776 CTAAACTCAAGAACATAATTATCGAAGATGAGAACCTTACCAATGAGAAGGAGAAGAACA 835
Query 836 TGGAGATCACGACCGTGGAGGCTCTTGCGGCCTACGTTTGGAGAGCAAGATGTCGAGCCA 895
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 836 TGAAGATCACGACCGTGGAGGTTCTTGCGGCCTACGTTTGGAGAGCAAGATGTCGAGCCA 895
Query 896 TGAAGCTAGATCCCGACACGATTACAGATTTGGTGATATCAGTCGGTATCCGCAGCTCTA 955
|||||||| |||||||||||||||| |||||||| ||||| ||| | |||||||||||||
Sbjct 896 TGAAGCTAAATCCCGACACGATTACGGATTTGGTTATATCCGTCAGCATCCGCAGCTCTA 955
Query 956 TGGAGCCTCCATTACCTGAAGGCTACTATGGAAATGCCTTCAC-CTATGCATCCGTGGCA 1014
| ||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||
Sbjct 956 TCGAGCCTCCATTACCTGAAGGCTACTATGGAAATGCCTTCACTC-ATGCTTCCGTGGCA 1014
Query 1015 TTGACAGCGGAAGAGCTAAGCAAAACGCCGATGTCTCGCCTTGTGAGGCTCATAAAAGAC 1074
||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1015 TTGACAGCGAAAGAGCTAAGCAAAACACCGATATCTCGCCTTGTGAGGCTCATAAAAGAC 1074
Query 1075 GCGAAGAGAGAGGCGCTCGATAATGGTTACGTGTGGGAGAAACTTAGAGAGATGGAGAAT 1134
|||||||||| |||||| |||||||| |||||||| ||| ||||||||||||||||||||
Sbjct 1075 GCGAAGAGAGCGGCGCTTGATAATGGATACGTGTGTGAGCAACTTAGAGAGATGGAGAAT 1134
Query 1135 ACAATGAAGCTGAAGTTAGCTTCCGAGGAGATCCACGGAGGAGTTTTCATGATGCTGACT 1194
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1135 ACAATGAAGCTGAAGTTAGCTTCCAAGGAGATCCACGGAGGAGTTTTCATGATGCTGACT 1194
Query 1195 GATTGGCGTCATCTTGGGTTGGATCAAGAAGTTTGGGGAGGTTTAATGAACATTATACCT 1254
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1195 GATTGGCGTCATCTTGGGTTGGATCAAGACGTTTGGGGAGGTTTAGTGAACATTATACCT 1254
Query 1255 TTGGTTCCTCTGACACTGCC-TTTTATGTGTGTTTTGTTGCCGGCGTCAAAAGCGGTTCC 1313
|||||||||||||||||||| |||| ||||||||||||| || |||||||||||||||||
Sbjct 1255 TTGGTTCCTCTGACACTGCCCTTTT-TGTGTGTTTTGTTACCAGCGTCAAAAGCGGTTCC 1313
Query 1314 AGGGAAGAGTGGTGGTGTTCGGGTGCTGACAACACTTCCTAGGTACGCAATGGCCAAGTT 1373
|||||||| |||||||||||||||||||||||||| |||||| |||| |||||||||||
Sbjct 1314 GGGGAAGAGCGGTGGTGTTCGGGTGCTGACAACACTACCTAGGGACGCGATGGCCAAGTT 1373
Query 1374 CAAGGAAGAGATGGATGCA---CTCCATCGGTGA 1404
|||||||||||| |||||| ||||||| ||||
Sbjct 1374 CAAGGAAGAGATAGATGCAGTACTCCATCCGTGA 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69176351010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5