BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897568
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47190.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1515 0.0
> AT3G47190.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:17374379-17376054
REVERSE LENGTH=1152
Length=1152
Score = 1515 bits (820), Expect = 0.0
Identities = 955/1017 (94%), Gaps = 21/1017 (2%)
Strand=Plus/Plus
Query 1 ATGAGCAACTCGGAGTCTTATCCACCAGAGTTTCGACCTTTAATGAGCGAACCAACCGAA 60
||||||||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct 23 ATGAGCAACTCGGAGTCTTATCCACCAGAGTTTCGACCTCTAATGA--G-------CG-- 71
Query 61 CCAGAAACATCCATTGAACCGCGGCCGGGTTTAGACCGGAGCAAAGATATCGATATCCCG 120
| ||| ||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 72 --A-AAA-ATCCACTGAA------ACGGGTCTAGACCGGAGCAAAGATATCGATATCCCG 121
Query 121 GTTATCGATATGGAGCATTTGGACATGGAGAAACTGAGAGAAGCATGCAAAGACTGGGGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 GTTATCGATATGGAGCATTTGGACATGGAGAAACTGAGAGAAGCATGCAAAGACTGGGGG 181
Query 181 ATCTTCCATTTGGAGAATACTGGGATACCTTTAACGTTGATGTCACAGGTGAAAGAGATA 240
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 182 ATCTTCCATTTGGAGAATACTGGGATACCCTTAACGTTTATGTCACAGGTGAAAGAGATA 241
Query 241 ACGGAGTCAGTGTTGAGTCTACCGTTTGAAGAGAAACGGACGTTGTTCGGCGTTAACTCT 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 242 ACGGAGTCAGTGTTGAGTCTGCCGTTTGAAGAGAAACGGACGTTGTTCGGCGTTAACTCT 301
Query 301 CCGTTATCGTATTACTGGGGAACACATACGGTGAGTCCATCGGGAAAAGCTGTAACGAGA 360
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 302 CCGTTATCGTATTACTGGGGAACACATACGGTAAGTCCATCGGGAAAAGCCGTAACGAGA 361
Query 361 GCACCACAAGAATCTAGTGGTCACTTGTTCGAAGGCATCAATATTCCTCTGGCTTCTCTC 420
|| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 362 GCCCCACAAGAATCTAGTGGTCACTTGTTCGAAGGCATCAATATTCCTCTTGCATCTCTC 421
Query 421 TCTCGTCTTCTGGCACTTTCTTGTTCTGATCCCAAGCTTGAGTCTTTCAGAGTGGTGATG 480
||||| ||||| |||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 422 TCTCGGCTTCTTGCACTTTCTTGTACTGATCCCAAGCTTGAGTCTTTCCGAGTGGTGATG 481
Query 481 GAGGAATATGGAAAGCATGTAACTAGGATTATTGTGACCCTATTTGAAGCTATAACAAAA 540
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | ||
Sbjct 482 GAGGAATATGGGAAGCACGTAACTAGGATTATTGTGACCCTATTTGAAGCTATAATAGAA 541
Query 541 ACTTTGTCCCTCGAATTATCCGGTGACCAGAAAATGAGCTACTTATCGGAGTCAACAGGT 600
|| |||||||| ||||||||||||||||| |||||| |||||||||| ||||||||||||
Sbjct 542 ACCTTGTCCCTTGAATTATCCGGTGACCAAAAAATGGGCTACTTATCAGAGTCAACAGGT 601
Query 601 GTGATACGTGTTCAACGGTATCCTCAGTGCACTGAATCCCCCGGACTCGAGGCTCATACG 660
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 602 GTGATACGTGTTCAACGGTATCCTCAGTGTACCGAATCCCCCGGACTCGAAGCTCATACG 661
Query 661 GATAGTTCGGTGATATCGATCATAAACCAAGACGACGTTGGTGGGCTAGAGTTCATGAAA 720
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 662 GACAGTTCGGTGATATCGATCATAAACCAAGACGATGTTGGTGGGCTAGAGTTCATGAAA 721
Query 721 GATGGGGAATGGTTCAATGTCAAACCTCTTGCCAATTCTTTTGTCATCGGTCTTGGGGAT 780
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 722 GATGGGGAATGGTTCAATGTCAAACCTCTTGCCAGTTCTTTTGTCGTCGGTCTTGGGGAT 781
Query 781 ATGATGCAGGTGATAAGTGATGAGGAATACAAGAGTGTGTTGCATAAAGTGGGAAAGAGG 840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 782 ATGATGCAGGTGATAAGTGATGAGGAATACAAGAGTGTGTTGCATAAAGTAGGAAAGAGG 841
Query 841 ATGAAGAAGAAGGAGAGATACTCGATAGTTTACTTTGTGTTCCCGGAGAAAGATTGTATG 900
|||| |||||| |||||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct 842 ATGAGGAAGAAAGAGAGATACTCGATAGTTAACTTTGTGTTCCCGGACAAAGACTGTATG 901
Query 901 TTTAACTCTACTCGCTATAAGCCATTCAAATTCTCGGAGTTTGAAGCTCAAGTTAAGCTT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TTTAACTCTACTCGCTATAAGCCATTCAAATTCTCGGAGTTTGAAGCTCAAGTTAAGCTT 961
Query 961 GATGTTGAGACTCATGGTAGCAAAATCGGCCTTTCTAGGTTCCTAAGCAACCCCTAG 1017
||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 962 GATGTTGAGACCCATGGTAGCAAAGTCGGCCTTTCTAGGTTCCTGAGCAACCCCTAG 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5