BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897572

Length=186
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G06680.1 | Symbols:  | Ribosomal L29e protein family | chr3:...   250    3e-66
  AT3G06700.1 | Symbols:  | Ribosomal L29e protein family | chr3:...   248    1e-65


> AT3G06680.1 | Symbols:  | Ribosomal L29e protein family | chr3:2114254-2114879 
REVERSE LENGTH=402
Length=402

 Score =  250 bits (135),  Expect = 3e-66
 Identities = 161/173 (93%), Gaps = 4/173 (2%)
 Strand=Plus/Plus

Query  1    ATGGC-AAAGTCAAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGCATAAGAACGG  59
            ||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  69   ATGGCGAAA-TCGAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGCATAAGAACGG  127

Query  60   AATCAAGAAGCCAAGGAGGCACCGTCACACCCCAACCAGAGGAATGGATCCTAAGTTCCT  119
            |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct  128  AATCAAGAAGCCAAGGAGACACCGTCACACACCAACCAGAGGAATGGATCCTAAATTCCT  187

Query  120  GAGGAACCAGAGGTACGCAAGGAAGCACAACATCAACG-GTGGCGAGAATGCT  171
             || ||||||||||| ||||||||||||||| |||| | ||||||||||||||
Sbjct  188  AAGAAACCAGAGGTATGCAAGGAAGCACAACGTCAA-GAGTGGCGAGAATGCT  239


> AT3G06700.1 | Symbols:  | Ribosomal L29e protein family | chr3:2117347-2118007 
REVERSE LENGTH=463
Length=463

 Score =  248 bits (134),  Expect = 1e-65
 Identities = 165/180 (92%), Gaps = 2/180 (1%)
 Strand=Plus/Plus

Query  1    ATGGCAAAGTCAAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGCATAAGAACGGA  60
            ||||| ||||| ||||||||||||||||| || ||||| || || || || |||||||||
Sbjct  106  ATGGCCAAGTCGAAGAATCACACGGCGCATAACCAGTCGGCGAAAGCCCACAAGAACGGA  165

Query  61   ATCAAGAAGCCAAGGAGGCACCGTCACACCCCAACCAGAGGAATGGATCCTAAGTTCCTG  120
            ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  166  ATCAAGAAGCCAAGGAGACACCGTCACACCCCAACCAGAGGAATGGACCCTAAGTTCCTG  225

Query  121  AGGAACCAGAGGTACGCAAGGAAGCACAACATCAACGGT-GGCGAGAATGCTAGCGCTGA  179
            |||||||||||||||||||||||||||||| |||| ||  ||||||||||||||||||||
Sbjct  226  AGGAACCAGAGGTACGCAAGGAAGCACAACGTCAA-GGCCGGCGAGAATGCTAGCGCTGA  284



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8199120213


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5