BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897577

Length=909
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G31910.1 | Symbols:  | Domain of unknown function (DUF1985) ...   220    1e-56


> AT3G31910.1 | Symbols:  | Domain of unknown function (DUF1985) 
| chr3:12907877-12910391 REVERSE LENGTH=1580
Length=1580

 Score =  220 bits (119),  Expect = 1e-56
 Identities = 242/299 (81%), Gaps = 18/299 (6%)
 Strand=Plus/Plus

Query  486  CGGGATGGCATCCTCCAGTACCAT-C-TTCAAATATCCTCCTCGCCTCTATGAAGAAGGA  543
            |||||| |||||||| ||||  || | |||||||||||||  || || ||||||||||| 
Sbjct  299  CGGGATAGCATCCTCTAGTA--ATACATTCAAATATCCTCGACGGCTATATGAAGAAGGT  356

Query  544  AAATCTATTTTGCAACATCA-TAGCATGAACCACAACTGTTAT-TTGTCAAAAATTGGGC  601
            ||||||   ||| |||| ||  |||||||| ||| |||||| | ||||| | ||||||| 
Sbjct  357  AAATCTCCATTGAAACA-CAGAAGCATGAATCACTACTGTT-TCTTGTCGAGAATTGGGA  414

Query  602  TGATTCGAGAAGGATTAGGT-GTGGATGTGTGGGACAAATTAAAGGAATCATCTCTTGGT  660
            |||||  |||||||||||||  | |||||||||||    ||| || |||||||| |||| 
Sbjct  415  TGATTAAAGAAGGATTAGGTCAT-GATGTGTGGGATGCTTTAGAGAAATCATCTATTGGA  473

Query  661  GTATTTATAAAGCTT-GCTGAAG-CAGAATACACATGGGCTGCAAAGAAGGTTCACTTTA  718
            || ||| ||||| || | ||| | |   |||||||||||||||||||||||||||||| |
Sbjct  474  GTGTTTCTAAAG-TTAGTTGACGTC-TCATACACATGGGCTGCAAAGAAGGTTCACTT-A  530

Query  719  T-CCTCACAAATCAGCTGCGAGTAAACAACTTGCAT-GAGATTTGGTCTTTGATTGATG  775
            | ||||| ||||||||| |||||| ||||||| ||  ||||||||||||||||| ||||
Sbjct  531  TTCCTCATAAATCAGCTACGAGTAGACAACTT-CAAAGAGATTTGGTCTTTGATAGATG  588



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44406985948


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5