BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897581
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47390.1 | Symbols: PHS1 | cytidine/deoxycytidylate deaminas... 2113 0.0
> AT3G47390.1 | Symbols: PHS1 | cytidine/deoxycytidylate deaminase
family protein | chr3:17459339-17464655 FORWARD LENGTH=2182
Length=2182
Score = 2113 bits (1144), Expect = 0.0
Identities = 1254/1308 (96%), Gaps = 3/1308 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCTTTCATTTCGAATTT-GT--TCGTCTCCGTTAATCTGCAGAGCCACTCTCTCA 57
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 383 ATGGCTCTTTCATTTCGAATTTCTTCGTCGTCTCCGTTAATCTGCAGAGCCACTCTCTCA 442
Query 58 AACGGCGACAATGGTCGTAACCACCACGCGATTGATGCCGCTTTTATCCGACGCGCCGCC 117
||||||||||| |||||||| ||||| ||| ||||||||||||||||||||||||||||
Sbjct 443 AACGGCGACAACAGTCGTAACTACCACACGACTGATGCCGCTTTTATCCGACGCGCCGCC 502
Query 118 GATCTGGCCGAAATGTCCGCCGGACTTACTTCACCGCACCCTAATTTCGGTTGTGTAATC 177
||| || |||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 503 GATTTGTCCGAAATGTCCGCCGGACTTACTTCACCTCACCCTAATTTCGGCTGTGTAATC 562
Query 178 GCTACTTCTTCCGGTAAAGTCGCCGGAGAAGGATATCTATACGCTCAAGGCACTAAACCG 237
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 563 GCCACTTCTTCCGGTAAAGTCGCCGGAGAAGGATATCTATACGCTCAAGGTACTAAACCG 622
Query 238 GCGGAAGCGTTGGCTGTTGAAGCTGCCGGAGAGTTTTCTAGAGGCTCCACTGCTTATTTG 297
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 623 GCGGAAGCGTTGGCTGTTGAAGCTGCCGGAGAGTTTTCTAGAGGCGCCACTGCTTATTTA 682
Query 298 AACATGGAGCCTGGTGATTGTCATGGTGACCACACTGCTGTATCTGCTCTTGTTCAGGCA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 AACATGGAGCCTGGTGATTGTCATGGTGACCACACTGCTGTATCTGCTCTTGTTCAGGCA 742
Query 358 GGAATTGACCGAGTTGTTGTTGGAATAAGGCATCCTCTGCAACATCTTAGAGGCTCTGCG 417
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 743 GGAATTGAACGAGTTGTTGTTGGAATAAGGCATCCTTTGCAACATCTTAGAGGCTCTGCG 802
Query 418 ATTCGTGAATTAAGAAGTCAAGGGATCGAAGTTAATGTTCTTGGAGAAGACTTTGAGAGT 477
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 803 ATTCGTGAATTAAGAAGTCATGGTATCGAAGTTAATGTTCTTGGAGAAGACTTTGAGAGT 862
Query 478 AAAGTTCTCGAGGATGCTCGGAAATCGTGTCTTCTTGTGAATGCTCCTTTGATTCATAGA 537
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 AAAGTTCTTGAGGATGCTCGGAAATCGTGTCTTCTTGTGAATGCTCCTTTGATTCATAGA 922
Query 538 GCTTGTTCTCGGGTTCCGTTTTCGGTTCTTAAGTATGCAATGACTCTTGATGGTAAGATT 597
||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 923 GCTTGTTCTCGAGTTCCGTTCTCTGTTCTTAAGTATGCCATGACTCTTGATGGTAAGATT 982
Query 598 GCAGCAAGTAGTGGACATGCAGCTTGGATAAGTAGTAAACTCTCTAGAACCCGAGTGTTT 657
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 983 GCAGCGAGTAGTGGACATGCAGCATGGATAAGTAGTAAACTCTCTAGAACCCGAGTGTTC 1042
Query 658 GAGTTGCGAGGAGGAAGTGATGCTGTGATAGTTGGAGGAAACACAGTACGCCAAGATGAT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 GAGTTGCGAGGAGGAAGTGATGCTGTGATAGTTGGAGGAAACACAGTACGCCAAGATGAT 1102
Query 718 CCTCGATTGACTGCAAGACATGGACAAGGTCACACCCCTACTCGAATTGTGATGACACAG 777
|||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||
Sbjct 1103 CCTCGATTGACTGCAAGACACGGACAGGGTCACACCCCTACACGAATTGTGATGACTCAG 1162
Query 778 AGTCTTGATCTTCCTGAGAAAGCCAATCTATGGGATGTCGCGGAAGTATCTACCATTGTT 837
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct 1163 AGTCTTGATCTTCCTGAGAAAGCTAATCTATGGGATGTCTCGGAAGTATCTACCATAGTT 1222
Query 838 GTTACCCAAAGGGGTGCAAGAAAGAGTTTCCAGAAATTTCTTGCGTCCAAGGGTGTTGAA 897
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1223 GTTACCCAAAGGGGTGCAAGAAAGAGTTTCCAGAAATTGCTTGCGTCCAAGGGTGTTGAA 1282
Query 898 GTTGTGGAGTTTGACATGTTGAATCCGAGGGAAGTTATGGAATATTTCCACCTTCGTGGA 957
|||||||||||||||||||||||||| || |||||||||||||||||||| || ||||||
Sbjct 1283 GTTGTGGAGTTTGACATGTTGAATCCAAGAGAAGTTATGGAATATTTCCATCTCCGTGGA 1342
Query 958 TATCTTTCGATACTATGGGAGTGTGGGGGAACATTAGCTGCATCTGCTATATCATCCAGT 1017
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 TATCTTTCTATACTATGGGAGTGTGGGGGAACATTAGCTGCATCTGCTATATCATCCAGT 1402
Query 1018 GTCATCCACAAGGTTGTTGCTTTTGTTGCTCCAAAAATTATTGGTGGGAGTAAAGCACCT 1077
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1403 GTCATCCACAAGGTTGTTGCTTTCGTTGCTCCAAAAATTATCGGTGGGAGTAAAGCACCT 1462
Query 1078 TCCCCCGTTGGTGACCTTGGGATGGTAGAGATGACACAAGCATTGAATCTAATCGATGTT 1137
||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1463 TCCCCTGTGGGTGACCTTGGGATGGTAGAGATGACACAAGCATTGAATTTAATTGATGTT 1522
Query 1138 TGCTACGAGCAGGTTGGTCCCGACATGCTTGTCAGCGGATTTCTTCAGCCCATACCAGAC 1197
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 TGTTATGAGCAGGTTGGTCCCGACATGCTTGTCAGCGGATTTCTTCAGCCCATACCAGAC 1582
Query 1198 CTTTTACCTGTTATCCCATCAGAGGATGCAACTGTTGAGATTGACCCCAGTGTTGACCCC 1257
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1583 CTCTTACCTGTTATCCCATCAGAGGATGCAACTGTCGAGATTGACCCCAGTGTTGACCCC 1642
Query 1258 TTTGAACCTAGTATCATCTTCTTCTACAAAACATGGGACCTTTATGGA 1305
||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1643 TTTGAACCTAGTATCATATTCTTCTACAAAACATGGGACCTCTATGGA 1690
Score = 597 bits (323), Expect = 1e-169
Identities = 367/389 (94%), Gaps = 0/389 (0%)
Strand=Plus/Plus
Query 1352 AGGCAAACAAGTTTGTTGGGGTCGAAAATCCGATGGCACATGAATGCGTTGAGAAAATTA 1411
||||||||||||||||||||||||||||||| | |||| |||| ||||||||||||||||
Sbjct 1794 AGGCAAACAAGTTTGTTGGGGTCGAAAATCCAAAGGCATATGATTGCGTTGAGAAAATTA 1853
Query 1412 GAACAGCTAGAAGTCCAGAGGAGGCAGCTCTGATAGGCAGATCAACGCTGAGACAGAAAC 1471
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1854 GAACAGCTAGAAGTCCAGAGGAGGCAGCTCTGATAGGCAGATCAACACTGAGACAGAAAC 1913
Query 1472 CTGAACTGGTTCGGAATGACTGGGAAGATGTGAAGATAGAAGTAATGTATAAGGCTCTAA 1531
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||
Sbjct 1914 CTGAACTGGTTCGGAATGATTGGGAAGATGTGAAGATAGAAGTAATGTACAAGGCTTTAA 1973
Query 1532 AATGTAAGTTCTCAACTTATCCTCATTTGAAATCAATGTTGCTTTCGACCGTTGGATCTG 1591
|||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||| | |
Sbjct 1974 AATGCAAGTTCTCAACTTATCCTCACTTGAAATCAATGTTGCTCTCGACAATTGGAACAG 2033
Query 1592 TTCTCGTGGAGGCTTCACCGCACGATCTATTCTGGGGAGGTGGTCGTGAAGGAGAAGGGC 1651
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2034 TTCTCGTGGAGGCTTCACCGCACGATCTATTCTGGGGAGGTGGCCGTGAAGGAGAAGGGC 2093
Query 1652 TTAATTATCTTGGTCGACTACTTATGCAGCTTCGTTCGGAGTATTTGGACGAATCCTCTG 1711
|||| |||||||||||||| ||||||||||||||||| |||||| ||| |||||||||||
Sbjct 2094 TTAACTATCTTGGTCGACTGCTTATGCAGCTTCGTTCTGAGTATCTGGGCGAATCCTCTG 2153
Query 1712 TTTCAGCTGAAAACACTTCTTCGGCCTGA 1740
||||||||||||| |||||||||||||||
Sbjct 2154 TTTCAGCTGAAAAGACTTCTTCGGCCTGA 2182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86043734130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5