BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897583
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47410.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 734 0.0
> AT3G47410.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G62400.1);
Has 9 Blast hits to 9 proteins in 3 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17468795-17469460
REVERSE LENGTH=666
Length=666
Score = 734 bits (397), Expect = 0.0
Identities = 582/668 (87%), Gaps = 25/668 (4%)
Strand=Plus/Plus
Query 1 ATGATGGCAAAGATAAACTCAGTCTTGGAGAAGAAACTTGAAGAACTCGAGTCTCTACTT 60
|||| ||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGAAGGCAAAGATCAACTCAGTGTTGGAGAAGAAACTTGAAGAACTCGAGTCTCTTCTT 60
Query 61 GAAGTAGTCACTTCTAACTATGATGATCCCAATATTCGAAAACTACAACTCGGAATTTTA 120
|||||| |||||| | ||||| ||||||||||| |||||||| | ||||||||||| |
Sbjct 61 GAAGTAATCACTTTTGACTATAATGATCCCAATGTTCGAAAAATGCAACTCGGAATCACA 120
Query 121 TTCGCCACGACCCTTTTAACGGCTGAGACATCGTCAAGACGAAAGGATGTGGAAGGAGAA 180
||||| | ||||||| ||||||||||||||||||| | | |||||||||||||||||||
Sbjct 121 TTCGCGAAGACCCTTCTAACGGCTGAGACATCGTCCCGGCCAAAGGATGTGGAAGGAGAA 180
Query 181 GAAGACGTTGAAGAATTGTTTAAACTACGTTGCATGGCAAATAGGTTATCCGAAATGGAA 240
|||||| ||||||| |||| |||||| |||||||||||| | ||||||| |||||||||
Sbjct 181 GAAGACATTGAAGAGTTGTATAAACTGCGTTGCATGGCAGAGAGGTTATTCGAAATGGAG 240
Query 241 GCTTTTATCACCAACCTATTGCCCGGTCATGGTAACGGTTCATTCATCAAACCGG---TG 297
|||||||||||||||| |||||||||||||||||| |||| ||| |||||||||| ||
Sbjct 241 GCTTTTATCACCAACCAATTGCCCGGTCATGGTAATGGTTTATTGATCAAACCGGAAATG 300
Query 298 GAAAGTTTGGAAACTAATGATGGTA--A-C---GGTGAAACCGGTGTGGATTACTCGTTG 351
||||||||||||||||||| | ||| | | ||| ||||||||| ||||||||| |||
Sbjct 301 GAAAGTTTGGAAACTAATGCTTGTATTATCAACGGTAAAACCGGTGAGGATTACTCTTTG 360
Query 352 GTTGAATCTTGTCTAAACGAGTCTAAAGCAGAAGAAGAGGAAGAAGA-GGAGGAAGACCT 410
|| ||||||||||||| ||||| ||||||||||||||| ||||| || ||||||||| |
Sbjct 361 GTCGAATCTTGTCTAATCGAGTGTAAAGCAGAAGAAGAAGAAGA-GAAGGAGGAAGAAGT 419
Query 411 AGAGGCTGAGCAGCGACCATTGTTCCAAGATGC---A--A-CATCGGA-A-G--AG-G-T 458
||||||||||||| | |||||||||||||| || | | ||||||| | | || | |
Sbjct 420 AGAGGCTGAGCAGTGGCCATTGTTCCAAGAAGCGTCATCATCATCGGAGAAGGGAGAGGT 479
Query 459 TACGTTTCCGGCGGTGGCTACGGTTAAAGAAGAGGTGGTGGTTAGAGAAGTGAAAGAGAA 518
|||| ||||||||||||| |||||||| ||||| ||| ||||||| ||||||||||||||
Sbjct 480 TACGATTCCGGCGGTGGCGACGGTTAAGGAAGATGTGATGGTTAGTGAAGTGAAAGAGAA 539
Query 519 GGGGTGTGTTGGTTTTAGGGCTTTGGTTTGTATCGGTTTAATTGGTTTATTTGGGTGTGT 578
||| ||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||
Sbjct 540 GGGTTGTGTTGGTTTTAGGGCATTGGTTTGTTTCGGTTTAATTGGTTTAGTTGGGTGTGT 599
Query 579 GATGAGTTTAGTTGGTTATATTGGTGAT-TGCATGGAGGAGGATCAATTTTTACTTACCC 637
|||||||||||||||||||||||||||| | ||||||||||||| ||| ||| |||||||
Sbjct 600 GATGAGTTTAGTTGGTTATATTGGTGATAT-CATGGAGGAGGATAAATATTTCCTTACCC 658
Query 638 CAACTTAA 645
| ||||||
Sbjct 659 CTACTTAA 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31145171140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5