BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897584
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55210.1 | Symbols: anac063, NAC063 | NAC domain containing ... 832 0.0
AT5G39690.1 | Symbols: ANAC093, NAC093 | NAC domain containing ... 375 4e-103
AT3G56560.1 | Symbols: anac065, NAC065 | NAC domain containing ... 337 2e-91
> AT3G55210.1 | Symbols: anac063, NAC063 | NAC domain containing
protein 63 | chr3:20465215-20466240 FORWARD LENGTH=843
Length=843
Score = 832 bits (450), Expect = 0.0
Identities = 684/792 (86%), Gaps = 36/792 (5%)
Strand=Plus/Plus
Query 107 TGTCTCCTCCGTCGACGATGA-CGTACCTATTACCGCCAGGTTTTAAGTTTATGCC-ATC 164
||||||||||||||||||| | | ||| ||||||||||||||||||||||| |||| | |
Sbjct 2 TGTCTCCTCCGTCGACGAT-AGCTTACGTATTACCGCCAGGTTTTAAGTTTGTGCCAAAC 60
Query 165 TGATGAACAAGTTATCTTTTGTTACTTGAAACCCTACTTGGACGGCAACAAGAACGTATT 224
|||||| |||| ||| ||||||||||||||| |||| ||||||||||| |||||||||
Sbjct 61 -GATGAAGAAGTCATCCATTGTTACTTGAAACCTTACTCGGACGGCAACACGAACGTATT 119
Query 225 GCTCGATGTTCCTATTCATCTCGTCAATATTTACGAGTCGAATCCAC-AACAACTTTCAG 283
|||| ||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||
Sbjct 120 GCTCCATGTTCCTATTCATCTCGTCAATATCTACGAGTCGAATCCACAAAC-ACTTTCAG 178
Query 284 TGGAATT-CTGTAAGGGTAACGACAAAGAATGGTTCATTATAACGGAGAGGAACAAAGTT 342
|||||| | | ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 179 AGGAATTCCAG-AAGGGTAACGATAAAGAATGGTTTATTATAACGGAGAGGAACAAAGTT 237
Query 343 GATCAAGGTTTAAGCAAAACAAAGAGAGTTGGTAATGGTGGGACAACAAGGCAGAAACGT 402
||||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||
Sbjct 238 GATCAAGGTTTAAGCCAAACAAAGAGAGTTGGTTATGGTGCG--AA-AAGGCAGAAACGT 294
Query 403 GGCGACACTAAAGGAGGATATTGGCACGCAACAGTGGGAGCCCAGGAGATCAACGCTGGA 462
| ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 295 GTCGACACTAACGGAGGATATTGGCACGCAACAGTGGCTGCCCAAAAGATCAACGCTGGA 354
Query 463 CAAGGTGTCGTTGGCTACAAAACGG-CATTTGCATACTACGTTAGGAAA-CAGTCAGCCG 520
| ||||||||| || |||||| || || | |||||||||||| ||||| || |||| |
Sbjct 355 GATGGTGTCGTTCGCAACAAAA-GGCCACTGGCATACTACGTTGGGAAACCA-TCAGAAG 412
Query 521 ACTTCAAAACTGATTGGTTAATGCTTGAATACTC-GTTGCATCACACTTGTCACAACAAC 579
| ||||||||||||||||||||| |||||||| ||| ||||| ||| ||||||||||
Sbjct 413 GCGTCAAAACTGATTGGTTAATGCAAGAATACTCTCTTG-ATCACTCTTCTCACAACAAC 471
Query 580 GACAAGGATTACACTTTGTGCAAGATCTATCTGACTCCAcaagcaacaaagaagaagaaa 639
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 472 GACAAGGATTACACTTTGTGCAAGATCTATCTTACTCCACAAGCAACAAAGATGAATAAA 531
Query 640 gaagtgg-aggcgcaaaataagaagcagaagaaaggacaagGCGTTATTTCAGTTGCACC 698
||||||| || | | || |||||||||||||||||| ||| |||| |||||||||||||
Sbjct 532 GAAGTGGGAGAAG-AGAAGAAGAAGCAGAAGAAAGGAGAAGCCGTTGTTTCAGTTGCACC 590
Query 699 TGTGGAAGCATTGGAAGAGCAGCAGCCTCT-TAATGTCGAGTATCCA-CAACCGCATCAA 756
||||||||||||||||||||||| |||| | |||||||||||||| | ||||||| | |
Sbjct 591 TGTGGAAGCATTGGAAGAGCAGCTGCCT-TGTAATGTCGAGTATC-ATCAACCGC-T-A- 645
Query 757 TCGCAAGCCCTGCTGGATTCTTATCAACCGCAGCCTCATGATATTGCCTT-TCCGCAACC 815
||| || ||| ||||||| |||||||||||||||||| ||| | | || || |
Sbjct 646 --GCA--CC--GCTAGATTCTTGCCAACCGCAGCCTCATGAT-TTGGCGTATCAACAGCA 698
Query 816 GCAGTTTTCG-CAATGCCCGCTAGATTCTCAGCAACCGCAGCCTCATGATTTGGCGTATA 874
|||||||| | | | |||| || |||||| | |||||||||||||||||| ||| | ||
Sbjct 699 GCAGTTTT-GTCCAGGCCCACTGGATTCTTATCAACCGCAGCCTCATGATATGGAGAATC 757
Query 875 AGCAACCGCATA 886
||||||||||||
Sbjct 758 AGCAACCGCATA 769
Score = 60.2 bits (32), Expect = 4e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 769 CTGGATTCTTATCAACCGCAGCCTCATGATAT 800
||||||||||||||||||||||||||||||||
Sbjct 718 CTGGATTCTTATCAACCGCAGCCTCATGATAT 749
> AT5G39690.1 | Symbols: ANAC093, NAC093 | NAC domain containing
protein 93 | chr5:15888171-15890187 FORWARD LENGTH=885
Length=885
Score = 375 bits (203), Expect = 4e-103
Identities = 299/343 (87%), Gaps = 16/343 (5%)
Strand=Plus/Plus
Query 295 AAGGGTAACGACAAAGAATGGTTCATTATAACGGAGAGGAACAAAGTTGATCAAGGTTTA 354
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 124 AAGGGTAACGATAAAGAATGGTTTATTATAACGGAGAGGAACAAAGTTGATCAAGGTTTA 183
Query 355 AGCAAAACAAAGAGAGTTGGTAATGGTGGGACAACAAGGCAGAAACGTGGCGACACTAAA 414
||| |||||||||||||||||||||||| | || |||||||||||||| ||||||||
Sbjct 184 AGCCAAACAAAGAGAGTTGGTAATGGTGCG--AA-AAGGCAGAAACGTGTTGACACTAAC 240
Query 415 GGAGGATATTGGCACGCAACAGTGGGAGCCCAGGAGATCAACGCTGGACAAGGTGTCGTT 474
||||||||||||||||||||||||| ||||| |||||||||||||| | |||||||||
Sbjct 241 GGAGGATATTGGCACGCAACAGTGGCTGCCCAAAAGATCAACGCTGGAGATGGTGTCGTT 300
Query 475 GGCTACAAAACGGC-ATTTGCATACTACGTTAGGAAAC-AGTCAGCCGACTTCAAAACTG 532
||| |||||| ||| | |||||||||||| |||||||| | |||| ||| |||||||||
Sbjct 301 GGCAACAAAA-GGCCACTTGCATACTACGATAGGAAACCA-TCAGAAGACGTCAAAACTG 358
Query 533 ATTGGTTAATGCTTGAATACTCG-TTGCATCACACTTGTCA-CAACAACGACAAGGATTA 590
|||||||||||| |||||||| ||| |||||| || | |||| | ||| ||||
Sbjct 359 ATTGGTTAATGCAAGAATACTCTCTTG-ATCACAA----CAACGACAAGGT-AAG-ATTA 411
Query 591 CACTTTGTGCAAGATCTATCTGACTCCAcaagcaacaaagaag 633
||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 412 CACTTTGTGCAAGATTTATCTTACTCCACAAGCAACAAAGAAG 454
> AT3G56560.1 | Symbols: anac065, NAC065 | NAC domain containing
protein 65 | chr3:20955404-20956867 FORWARD LENGTH=687
Length=687
Score = 337 bits (182), Expect = 2e-91
Identities = 256/290 (88%), Gaps = 11/290 (4%)
Strand=Plus/Plus
Query 1 ATGACGATGCATGGAAGAAACAAGCGCAAAGAAAGATCCTCGCCGGAACCGCAAACGCAA 60
|||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 205 ATGATGATGCCTGGAAGAAACAAGCGCAAAGAAAGATCCTGGCCGGAACCGCAAACGCAA 264
Query 61 CCACCGTCGGAGAATTC-TTCTTCTTC-T-TG-TTTGTCAGCTGATAACTTGTCTCCTCC 116
|||| ||| |||| ||| ||||||||| | | |||| ||||||||||| ||||||||||
Sbjct 265 CCACAGTCAGAGA-TTCCTTCTTCTTCGTCTTCTTTGGCAGCTGATAACATGTCTCCTCC 323
Query 117 GTCGACGAT-GACGTACCTATTACCGCCAGGTTTTAAGTTTATGCCAT-CTGATGAACAA 174
||||||||| | | ||| ||||||||||||||||||||||||||||| | ||| || ||
Sbjct 324 GTCGACGATAG-CTTACGTATTACCGCCAGGTTTTAAGTTTATGCCAAAC-GATAAAGAA 381
Query 175 GTTATCTTTTGTTACTTGAAACCCTACTTGGACGGCAACAAGAACGTATTGCTCGATGTT 234
|| ||| ||||||||||||||| |||| ||||||||||| |||||||||||| |||||
Sbjct 382 GTCATCAATTGTTACTTGAAACCTTACTCGGACGGCAACACCAACGTATTGCTCAATGTT 441
Query 235 CCTATTCATCTCGTCAATATTTACGAGTCGAATCCACA-ACAACTTTCAG 283
|||||||||| ||||||||| ||||||||||||||||| ||| |||||||
Sbjct 442 CCTATTCATCGCGTCAATATCTACGAGTCGAATCCACAGACA-CTTTCAG 490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55471602225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5