BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897595
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47500.1 | Symbols: CDF3 | cycling DOF factor 3 | chr3:17504... 1892 0.0
> AT3G47500.1 | Symbols: CDF3 | cycling DOF factor 3 | chr3:17504000-17506058
REVERSE LENGTH=1717
Length=1717
Score = 1892 bits (1024), Expect = 0.0
Identities = 1253/1361 (92%), Gaps = 25/1361 (2%)
Strand=Plus/Plus
Query 1 ATGATGATGGAGAGTAGAGATCCAGCTATTAAGCTCTTCGGTATGAAAATCCCTTTAACG 60
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 95 ATGATGATGGAGACTAGAGATCCAGCTATTAAGCTTTTCGGTATGAAAATCCCTTTTCCG 154
Query 61 GCGGTTTTTGAATCGTCGGTTACGGTGGAGGATGAGGAAGAAGATGACTGGAGCGGCGGA 120
|||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 155 TCGGTTTTTGAATCGGCAGTTACGGTGGAGGATGACGAAGAAGATGACTGGAGCGGCGGA 214
Query 121 GATGACAAATCACCAGATAAGGTAACTCTAGAGATATCAGATAAGAACAACAAGAACTGT 180
||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||
Sbjct 215 GATGACAAATCACCAGAGAAGGTAACTCCAGAGTTATCAGATAAGAACAACAACAACTGT 274
Query 181 AACAACAACAGTTTCAACAATTCGAATGATTCGAAACCCGAAA-CTGTGGATAAGGAGGA 239
||| |||||||||| || | | ||||||||||||||| || |||| || |||||
Sbjct 275 AACGACAACAGTTT---TAA--C--A--ATTCGAAACCCGAAACCT-TGGACAAAGAGGA 324
Query 240 GGCGACATCAACCGATCAGATAGAGAGCAGCGATTCGCCTGAGGATAATCAGCAGACGAC 299
||||||||||| |||||||||||||| || || |||||||||||||||||||||||||
Sbjct 325 AGCGACATCAACTGATCAGATAGAGAGTAGTGACACGCCTGAGGATAATCAGCAGACGAC 384
Query 300 AGCTGACGGTAAAACCCTGAAGAAACCGACTAAGATCCTACCGTGTCCGAGATGTAAAAG 359
| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 385 ACCTGATGGTAAAACCCTAAAGAAACCGACTAAGATTCTACCGTGTCCGAGATGCAAAAG 444
Query 360 TATGGATACTAAGTTCTGTTATTACAACAACTACAACATAAACCAGCCTCGTCATTTCTG 419
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CATGGAGACCAAGTTCTGTTATTACAACAACTACAACATAAACCAGCCTCGTCATTTCTG 504
Query 420 CAAGGCTTGTCAGAGATATTGGACTGCTGGAGGGACTATGAGGAATGTTCCCGTGGGGGC 479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 505 CAAGGCTTGTCAGAGATATTGGACTGCTGGAGGGACTATGAGGAATGTTCCTGTGGGGGC 564
Query 480 AGGACGTCGTAAGAACAAAAGCTCCTCTTCTCATTACCGTCATATCACTATTTCCGAGGC 539
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 565 AGGACGTCGTAAGAACAAAAGCTCATCTTCTCATTACCGTCACATCACTATTTCCGAGGC 624
Query 540 TCTAGAGGCTGCGAGGCTTGATCCGGGGTTGCAGGCAAACACCCGGGTCTTGAGTTTTGG 599
||| ||||||||||||||||| ||||| || ||||||||||| ||||||||||||||||
Sbjct 625 TCTTGAGGCTGCGAGGCTTGACCCGGGCTTACAGGCAAACACAAGGGTCTTGAGTTTTGG 684
Query 600 TCTGGAAGCTCATCAACAGCACG---CTGCTCCCATGAAACCTGTGATGAAGCTACAGGG 656
||| |||||||| || ||||||| |||||||||||| |||||||||||||||||| |
Sbjct 685 TCTCGAAGCTCAGCAGCAGCACGTTGCTGCTCCCATGACACCTGTGATGAAGCTACAAGA 744
Query 657 AGATCAAAAGGCCTCAAACGGAGCTAGGAACGGGTTTCACGGGTTAGCGGATCAGCGGCT 716
||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| |||||
Sbjct 745 AGATCAAAAGGTCTCAAACGGTGCTAGGAACAGGTTTCACGGGTTAGCGGATCAACGGCT 804
Query 717 TGTGGCTCGGGTAGAGAATGGAGATGATTGCTCAAGCGGATCCTCTGTGACCACCTCTAA 776
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 TGTAGCTCGGGTAGAGAATGGAGATGATTGCTCAAGCGGATCCTCTGTGACCACCTCTAA 864
Query 777 CAATCATTCAGTGGATGAATCAAGAGCACAAAGCGGCAGAGTTGTTGACCCACAAATGaa 836
|||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 865 CAATCACTCAGTGGATGAATCAAGAGCACAAAGCGGCAGTGTTGTTGAAGCACAAATGAA 924
Query 837 caacaacaacaacaa---caTGAATGGTTATGCTTGCATCCCTGGTGTTCCATGGCCATA 893
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||
Sbjct 925 CAACAACAACAACAATAACATGAATGGTTATGCTTGCATCCCAGGTGTTCCATGGCCTTA 984
Query 894 CACGTGGAATCCAGCGATGCCTCCACCAGGCTTTTACCCGCCTCCAGGGTATCCAATGCC 953
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 985 CACGTGGAATCCAGCGATGCCTCCACCAGGTTTTTACCCGCCTCCAGGGTATCCAATGCC 1044
Query 954 GTTTTACCCTTACTGGACCATCCCAATGTTATCACCGCATCAATCCTCATCGCCTATGAG 1013
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||
Sbjct 1045 GTTTTACCCTTACTGGACCATCCCAATGCTACCACCGCATCAATCCTCATCGCCTATAAG 1104
Query 1014 CCAAAAAG-GTTCAAATCCAAACTCTCCCACTCTCGGAAAGCATTCGAGAGATGAAGAAT 1072
|||||| | |||||||| |||||||||| ||||||||||||||| |||||||||||| ||
Sbjct 1105 CCAAAA-GTGTTCAAATACAAACTCTCCGACTCTCGGAAAGCATCCGAGAGATGAAGGAT 1163
Query 1073 CCA-CGAAAAAGAACAACGAGACAGAGCGGAAACAGA-GGAACGGGTGCGTTCTGGTCCC 1130
| | |||||||| |||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 1164 C-ATCGAAAAAGGACAACGAGACAGAGCGAAAACAGAAGGC-CGGGTGCGTTCTGGTCCC 1221
Query 1131 AAAAACGTTGAGAATAGACGATCCAAACGAAGCAGCAAAGAGCTCGATATGGACAACATT 1190
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1222 GAAAACGTTGAGAATAGATGATCCTAACGAAGCAGCAAAGAGCTCGATATGGACAACATT 1281
Query 1191 GGGAATCAAGAACGAAGG-GATGTGCAAAGCCGGTGGTATGTTCGAAGGGTTTGATAAGA 1249
||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| | |
Sbjct 1282 GGGAATCAAGAACGA-GGCGATGTGCAAAGCCGGTGGTATGTTCAAAGGGTTTGATCATA 1340
Query 1250 AAACGAAGATGAATAACAACGAAAAAGCCGAAAATTCCCCTGTTCTTTCTGCTAACCCTG 1309
| || |||||| |||||||||| ||||| || || |||||||||||||||||||||||||
Sbjct 1341 AGACAAAGATGTATAACAACGACAAAGCTGAGAACTCCCCTGTTCTTTCTGCTAACCCTG 1400
Query 1310 CTGCTCTATCAAGATCACTCAATTTCCATGAACAAATATAG 1350
|||||||||||||||||| ||||||||||||||| || |||
Sbjct 1401 CTGCTCTATCAAGATCACACAATTTCCATGAACAGATTTAG 1441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66465521580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5