BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg897624 Length=885 Score E Sequences producing significant alignments: (Bits) Value AT3G47830.1 | Symbols: | DNA glycosylase superfamily protein |... 1225 0.0 > AT3G47830.1 | Symbols: | DNA glycosylase superfamily protein | chr3:17647069-17648346 FORWARD LENGTH=882 Length=882 Score = 1225 bits (663), Expect = 0.0 Identities = 810/881 (92%), Gaps = 10/881 (1%) Strand=Plus/Plus Query 1 ATGAGTAAAGCCCAGAAAA-GGAAACGCCTAAACCAAGACGACGGCGAATCAAAAACTCC 59 |||||||||||||| |||| |||||||||||||| || |||||||||||||||||||||| Sbjct 1 ATGAGTAAAGCCCA-AAAACGGAAACGCCTAAACAAATACGACGGCGAATCAAAAACTCC 59 Query 60 GTCCATTAAATCCACCGTCGACGGCGGCAACCCTTACCCTACACTTCTTAGACCTACCGC 119 | ||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 60 GGCCAATAAATCAACCGTCGACGGCGGCAATCCTTACCCTACACTACTTAGACCTACCGC 119 Query 120 TGAAGAGTGCCGAGAAGTAAGAGATGCTTTGTTGTCTCTCCATGGATTCCCTCCAGAGTT 179 |||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || || Sbjct 120 TGAAGAATGCCGAGACGTAAGGGATGCTTTGTTGTCTCTCCATGGATTCCCTCCCGAATT 179 Query 180 CGCCAATTACCGTCGTCAGAGACTCCGATCACTCTCCGCCGTCGATGGTCACGATACACA 239 ||| |||||||| ||||| |||||||||||| ||||||||||||||| |||||||||||| Sbjct 180 CGCTAATTACCGCCGTCAAAGACTCCGATCATTCTCCGCCGTCGATGATCACGATACACA 239 Query 240 ATGTACGATGAAATCTGAGCCATTGGATGAAGCGGAAGAGGAGAGTGTACTTGATGGCCT 299 |||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||| || Sbjct 240 GTGTAATCTGAAATCTGAGACATTGAATGAAACGGAAGAGGAGAGTGTACTTGATGGGCT 299 Query 300 GGTTAAAATTCTTCTTTCTCAGAACACAACTGAGAGCAATTCTCAAAGGGCTTTTGCTTC 359 ||||| |||||||| || ||||| ||||||||||||||||| ||||||||||||||||| Sbjct 300 TGTTAAGATTCTTCTCTCGCAGAATACAACTGAGAGCAATTCCCAAAGGGCTTTTGCTTC 359 Query 360 TCTTAAAGCTGCATTTCCGAATTGGGAAGATGTTTTGGCTGCTGAGTCCAAATCAATTGA 419 |||||||||| |||||||||| ||||| || |||||| ||||||||| ||||||||||| Sbjct 360 TCTTAAAGCTACATTTCCGAAATGGGATGACGTTTTGAATGCTGAGTCTAAATCAATTGA 419 Query 420 GAGTGCTATAAGATGTGGAGGATTGGCCCCGAAAAAGGCGGTGTGTATCAAGAATATATT 479 || |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 420 GAATGCTATAAGATGTGGAGGATTGGCACCGAAAAAGGCGGTGTGTATCAAGAACATATT 479 Query 480 GAACCGTTTGCAGAAAGAAAGAGG-AGTACTGTGCTTGGAGTATCTGCGCGGTTTATCGG 538 ||||||||||||||| |||||||| || | ||||||||||||||||||| |||||||||| Sbjct 480 GAACCGTTTGCAGAACGAAAGAGGTAG-ATTGTGCTTGGAGTATCTGCGAGGTTTATCGG 538 Query 539 TCGAAGAAGTAAAAACTGAGCTCTCTCATTTTAAAGGAATAGGACCTAAAACGGTTTCTT 598 |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 539 TCGAAGAAGTAAAAACCGAGCTCTCTCATTTTAAAGGAGTAGGACCTAAAACGGTTTCTT 598 Query 599 GTGTTCTGATGTTCAATCTCCAGCACAATGATTTCCCAGTAGACACCCATGTGTTTGAGA 658 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 599 GTGTTCTGATGTTCAATCTCCAGCACAATGATTTCCCAGTAGACACTCATGTGTTTGAGA 658 Query 659 TCGCAAAGGCGGTAGGTTGGGTCCCCAAAACCGCAGACAGGAACAAAACCTACGTTCATC 718 ||||||||||| |||||||||| || ||||||||||||||||||||||| || ||||||| Sbjct 659 TCGCAAAGGCGTTAGGTTGGGTTCCGAAAACCGCAGACAGGAACAAAACGTATGTTCATC 718 Query 719 TCAACCGCAGGATCCCGGATGAGCTCAAGTTTGATCTGAACTGTCTGTTATATACGCATG 778 ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 719 TCAACCGCAAGATCCCTGATGAGCTCAAGTTTGATCTGAACTGTCTGTTATATACACATG 778 Query 779 GTAAGCTCTGCAGCAATTGCAAGAAGACTGTTGCTAAACCAAAAGCAAAAGCTAGAGTGG 838 ||||| ||||||||||||||||||||| |||||||||||||||||| |||| | | | Sbjct 779 GTAAGATCTGCAGCAATTGCAAGAAGAATGTTGCTAAACCAAAAGCTAAAG-T-G-G--- 832 Query 839 CATCTCCTGATGAATGCCCTCTTGTGGGTTTTTCTGATTTA 879 ||||||||||||| ||||||||||| ||||||| ||||||| Sbjct 833 CATCTCCTGATGATTGCCCTCTTGTTGGTTTTTATGATTTA 873 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43201366420 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5