BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897637
Length=465
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47950.1 | Symbols: AHA4, HA4 | H(+)-ATPase 4 | chr3:1769270... 761 0.0
AT5G62670.1 | Symbols: AHA11, HA11 | H(+)-ATPase 11 | chr5:2515... 484 2e-136
> AT3G47950.1 | Symbols: AHA4, HA4 | H(+)-ATPase 4 | chr3:17692702-17697999
FORWARD LENGTH=3220
Length=3220
Score = 761 bits (412), Expect = 0.0
Identities = 444/460 (97%), Gaps = 0/460 (0%)
Strand=Plus/Plus
Query 6 GGTGGCTACTTTAATTGCAGTCTATGCAAATTGGAGCTTTGCTGCGATAGAAGGAATTGG 65
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2563 GGTGGCTACTCTAATTGCAGTCTATGCAAATTGGAGCTTTGCTGCGATAGAAGGAATAGG 2622
Query 66 TTGGGGATGGGCTGGGGTCATTTGGCTTTATAACATCATATTCTATGTCCCACTTGATTT 125
|||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||
Sbjct 2623 TTGGGGATGGGCCGGGGTCATTTGGCTCTATAACATCATATTCTACATCCCCCTTGATTT 2682
Query 126 CATCAAATTCTTCATCTGCTACACTCTTAGTGGCAGAGCCTGGGATCTTGTTATCGAACA 185
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2683 CATCAAATTCTTCATCCGCTACGCTCTTAGTGGCAGAGCCTGGGATCTTGTTATCGAACA 2742
Query 186 AAGGGTTGCGTTCACAAGGCAAAAGGATTTTGGGAAAGAACAAAGAGAGCTGCAATGGGC 245
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2743 AAGGGTTGCGTTCACAAGGCAAAAAGATTTTGGGAAAGAACAAAGAGAGCTGCAATGGGC 2802
Query 246 GCACGCACAGAGAACGCTCCATGGTCTACAGGCACCAGATACTAAGATGTTCACAGATCG 305
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2803 TCACGCACAAAGAACGCTCCATGGTCTACAAGCACCAGATACTAAGATGTTCACAGATCG 2862
Query 306 AACCCATGTCTGTGAACTTAACCAAATGGCTGAAGAAGCCAAGAGGAGAGCTGAAATCGC 365
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2863 AACCCATGTCAGTGAACTTAACCAAATGGCTGAAGAAGCCAAGAGGAGAGCTGAAATTGC 2922
Query 366 TAGGTTGCGGGAACTTCACACGCTCAAGGGCCATGTTGAATCAGTGGTGAGACTCAAAGG 425
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2923 TAGGTTGCGTGAACTTCACACGCTCAAGGGCCATGTTGAATCAGTGGTGAGACTCAAAGG 2982
Query 426 ACTCGACATAGAAACCATTCAACAAGCTTACACTGTCTGA 465
||||||||||||||||||||||||||||||||||||||||
Sbjct 2983 ACTCGACATAGAAACCATTCAACAAGCTTACACTGTCTGA 3022
> AT5G62670.1 | Symbols: AHA11, HA11 | H(+)-ATPase 11 | chr5:25159230-25165209
FORWARD LENGTH=3271
Length=3271
Score = 484 bits (262), Expect = 2e-136
Identities = 395/461 (86%), Gaps = 2/461 (0%)
Strand=Plus/Plus
Query 6 GGTGGCTACTTTAATTGCAGTCTATGCAAATTGGAGCTTTGCTGCGATAGAAGGAATTGG 65
|||||||||| |||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct 2560 GGTGGCTACTCTAATTGCAGTCTATGCGAATTGGAGCTTTGCTGCAATAGAAGGGATCGG 2619
Query 66 TTGGGGATGGGCTGGGGTCATTTGGCTTTATAACATCATATTCTATGTCCCACTTGATTT 125
||||||||||| |||||||| |||||||| || ||| |||||||| | || |||||| |
Sbjct 2620 GTGGGGATGGGCCGGGGTCATCTGGCTTTACAATATCGTATTCTATATTCCTCTTGATAT 2679
Query 126 CATCAAATTCTTCA-TCTGCTACACTCTTAGTGGCAGAGCCTGGGATCTTGTTATCGAAC 184
|||||| ||||| | || | || | ||||| || |||||||||||||||||||||||||
Sbjct 2680 CATCAAGTTCTTGATTC-GTTATGCCCTTAGCGGAAGAGCCTGGGATCTTGTTATCGAAC 2738
Query 185 AAAGGGTTGCGTTCACAAGGCAAAAGGATTTTGGGAAAGAACAAAGAGAGCTGCAATGGG 244
|||||||||| ||||| ||||| |||||||| |||||||||||||| ||||| |||||||
Sbjct 2739 AAAGGGTTGCATTCACGAGGCAGAAGGATTTCGGGAAAGAACAAAGGGAGCTACAATGGG 2798
Query 245 CGCACGCACAGAGAACGCTCCATGGTCTACAGGCACCAGATACTAAGATGTTCACAGATC 304
| || ||||||||||| || || ||||| || ||||||||| ||||||||||| | || |
Sbjct 2799 CACATGCACAGAGAACCCTGCACGGTCTGCAAGCACCAGATGCTAAGATGTTCCCGGAGC 2858
Query 305 GAACCCATGTCTGTGAACTTAACCAAATGGCTGAAGAAGCCAAGAGGAGAGCTGAAATCG 364
|||||||| || || ||| ||||||||| |||||||| ||||| ||||| || ||||
Sbjct 2859 GAACCCATTTCAACGAGCTTTCCCAAATGGCCGAAGAAGCTAAGAGAAGAGCCGAGATCG 2918
Query 365 CTAGGTTGCGGGAACTTCACACGCTCAAGGGCCATGTTGAATCAGTGGTGAGACTCAAAG 424
| ||||||||||| |||||||| || ||||| ||||||||||| || || ||||| ||||
Sbjct 2919 CCAGGTTGCGGGAGCTTCACACACTTAAGGGTCATGTTGAATCTGTTGTCAGACTAAAAG 2978
Query 425 GACTCGACATAGAAACCATTCAACAAGCTTACACTGTCTGA 465
| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 2979 GTCTCGACATTGAAACCATTCAACAAGCTTACACCGTCTGA 3019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22103024680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5