BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897639
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52618.1 | Symbols: | unknown protein; Has 6 Blast hits to ... 298 4e-80
> AT1G52618.1 | Symbols: | unknown protein; Has 6 Blast hits to
6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:19603147-19603662 FORWARD LENGTH=516
Length=516
Score = 298 bits (161), Expect = 4e-80
Identities = 211/235 (90%), Gaps = 3/235 (1%)
Strand=Plus/Plus
Query 18 AACGGAAGCTCGGATCTTGTTAG-TTACCGGTGGCAGAGAGTCAGTCGCATTAGATCCGG 76
|||||||||||||| |||||| | || || |||||||||| || ||||| |||||||||
Sbjct 118 AACGGAAGCTCGGAACTTGTT-GATTCCCAGTGGCAGAGAACCATTCGCACTAGATCCGG 176
Query 77 TGGTTTCAAGGTCCACGGCTTTGAGGCAGAGAAGAAGGATTGAAAACC-CCGTTGGAAGA 135
||||||||||||||||| |||||||||| ||||||||||||||||||| || | ||||||
Sbjct 177 TGGTTTCAAGGTCCACGACTTTGAGGCATAGAAGAAGGATTGAAAACCACCATCGGAAGA 236
Query 136 AACCAGTTTCCGACGATGCACCTCACCGTCGACTCGCCACTCCCGCTACAAACCTCCCAG 195
||||| ||||||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 237 AACCAATTTCCGACGATGCACCTCACCGTCGACTCACCAAACCCGCCACAAACCTCCCAG 296
Query 196 AAAACTCGACTCTCCAACACACCGGCTCTACGTCGACATATCCTGACCAAGCAAT 250
||||||||||||||| || ||||||||||||| ||| | ||||||||||||||||
Sbjct 297 AAAACTCGACTCTCCGACTCACCGGCTCTACGACGATAGATCCTGACCAAGCAAT 351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28131122320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5