BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897649
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48070.2 | Symbols: | RING/U-box superfamily protein | chr3... 1544 0.0
AT5G62910.1 | Symbols: | RING/U-box superfamily protein | chr5... 148 8e-35
> AT3G48070.2 | Symbols: | RING/U-box superfamily protein | chr3:17750712-17752761
FORWARD LENGTH=1307
Length=1307
Score = 1544 bits (836), Expect = 0.0
Identities = 1009/1086 (93%), Gaps = 37/1086 (3%)
Strand=Plus/Plus
Query 1 ATGATTTCTGATTCGATCACCAACGCTTCTGCTACTTCAGCTCCAAGCGCGAGGGATTTC 60
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 167 ATGATTTCTGATTCGATCACCAACGCTTCTGCTACTTCAGCTCCAACCGCCAGGGATTTC 226
Query 61 GGAAAAAAGAAAAGGACGAACAGGTCGGCTAAATTGAAACAGAGCAAGCTAGGTCTTCGT 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 227 GGAAAAAAGAAAAGGACGAACAGGTCGGCCAAATTGAAACAGAGCAAGCTAGGTCTTCGT 286
Query 121 CGTGAGCAATGGCTTTCTCAAGTTGCGCTGATTAATAAAGGGGATAAGGAGGAAATGGAT 180
||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 287 CGTGAACAATGGCTTTCTCAAGTTGCGATGATTAACAAAGGGGATAAGGAGGAAATGGAA 346
Query 181 TCGAATCGAAGAATTGGGAGGGAAAAGCTTGATCAGAGAGA---T---CGTCCGGTGGAG 234
|| ||||||||||||||||| ||||||| |||||||||||| | ||||||||||||
Sbjct 347 TCCAATCGAAGAATTGGGAGTGAAAAGCCTGATCAGAGAGATCTTCCGCGTCCGGTGGAG 406
Query 235 AATTTAGATGGGCAAGAAGAGACTAACAATGGAACACATCGTCATGAGAGCTTTATTGAG 294
||||||||| | || || |||||||||||||||||||||||||||||||||||||
Sbjct 407 AATTTAGAT------G-AG-GA-TAACAATGGAACACATCGTCATGAGAGCTTTATTGAG 457
Query 295 TCACTTTCTAATAGCCCTAACAGCATTCTTAGTGGCATGAATTCAATTCCTAATTTTAGC 354
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 458 TCACTTTCTAATAGCCCTAACAGTATTCTTAGTGGCATGAATTCAATTCCTAATTTTAGC 517
Query 355 AGCAGCAGTAGCAGTGGAAGTGGTGGCTCTTGCTCTGGTAATATAACAGAGGAGGAAGAT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 AGCAGCAGTAGCAGTGGAAGTGGTGGCTCTTGCTCTGGTAATATAACAGAGGAGGAAGAT 577
Query 415 GCTGATGATGATGGGTGCTTGGATGATTGGGAGGCTATTGCTGATGCTTTAGCTGCTGAT 474
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 578 GCTGATGATGATGGTTGTTTGGATGATTGGGAAGCTATTGCTGATGCTTTAGCTGCTGAT 637
Query 475 GATGAAAAGCATGAGAAACAGAATCCTCCTGAGTCCTGCGAAGAGCATGAGGATGTCAAG 534
|||||||||||||||||| |||||||||||||||| ||| |||||||||||||| |||||
Sbjct 638 GATGAAAAGCATGAGAAAGAGAATCCTCCTGAGTCTTGCCAAGAGCATGAGGATATCAAG 697
Query 535 CAATTGGC-TT-GTCCGAG-GGATTTAATCGGTGGATCTGATGTGGTTGCAAAGGCGGAT 591
|||| || || | || | ||| | || |||| | | | | || |||||||||||||
Sbjct 698 CAATCAGCTTTAAT-CG-GTGGAGCTGAT--GTGG-TTTTAAG-GGATGCAAAGGCGGAT 751
Query 592 TGTCCGAGAACAATATCAAGGAAGCAGAAGAGTAACCAGGCGTGGAGGCCAGACGATAAG 651
| | | || | ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 752 TCT-C-AG------A-GAAGGAAGCAAAAGAGTAACCAGGCGTGGAGGCCAGACGATAAG 802
Query 652 CTCCGTCCTCAGGGTCTGCCTAATTTGGAAAAGCAGCGTAGTTTTCCGGTCATGAATTTG 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 CTCCGTCCTCAGGGTCTGCCTAATTTGGAAAAGCAGCGTAGTTTTCCGGTCATGAATTTG 862
Query 712 CATTTTAATTCTGTGAC---AGTGCCATCTTCGTGCCCTATTTGCTACGAAGATCTTGAC 768
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 863 CATTTTAGTTCTGTGACTGTGGTGCCATCTTCGTGCCCTATTTGCTACGAAGATCTTGAC 922
Query 769 TTGACAGATTCAAATTTCTTGCCATGTCCTTGTGGATTCCGGCTTTGCCTTTTCTGCCAC 828
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 TTAACAGACTCAAATTTCTTGCCATGTCCTTGTGGATTCCGGCTTTGCCTTTTCTGCCAC 982
Query 829 AAGACGATATGCGATGGAGATGGGCGTTGTCCTGGTTGCAGAAAGCCATATGAAAGGAAC 888
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 983 AAGACGATATGCGATGGAGATGGGCGTTGTCCTGGTTGCAGAAAGCCTTATGAAAGGAAC 1042
Query 889 ACAATCAAGGTTGAGGCTAGTGTTCAAGGTGGTGGTCTGACTATTCGGCTTGCTCGTTCG 948
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 ACAATCAAGTTTGAAGCTAGTGTTCAAGGTGGTGGTCTGACTATTCGGCTTGCTCGTTCG 1102
Query 949 TCTAGCATGTTTTGCAGAGTGGTGTGTGAGTACATAAGGTGGTACACGAATTTCAAATAC 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 TCTAGCATGTTTTGCAGAGTGGTGTGTGAGTACATAAGGTGGTACACGAATTTCAAATAC 1162
Query 1009 ATAAAAAGTTGCAATAAGTCTCTTTCTCATAGCCTGCGAGAACCTTGCTTATCTATAATA 1068
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1163 ATAAAA-GTTGCAATAAGTCTCTTTCTCATAGCCTGCGAGAACCTTGCTTATCTGTAATA 1221
Query 1069 TTCTAA 1074
|||||
Sbjct 1222 CTCTAA 1227
> AT5G62910.1 | Symbols: | RING/U-box superfamily protein | chr5:25250256-25252236
FORWARD LENGTH=1543
Length=1543
Score = 148 bits (80), Expect = 8e-35
Identities = 135/160 (84%), Gaps = 10/160 (6%)
Strand=Plus/Plus
Query 1 ATGATTTCTGATTCGATCACCAACGCTTCTGCTACTTCAGCTCCAAGCGCGAGGGATTTC 60
|||||| | ||||||||||||||||||||||||||||||||| | |||| |||| |
Sbjct 339 ATGATTACAGATTCGATCACCAACGCTTCTGCTACTTCAGCT-----C-CGAGAGATTCC 392
Query 61 GGAAAAAAGAAAAGG-ACGAACAGGTCGGCTAA-ATTGAAACAGAGCAAGCTAGGTCTTC 118
||||| ||||| ||| || || | ||||||||| | |||| |||| |||||| ||||| |
Sbjct 393 GGAAAGAAGAAGAGGAAC-AATAAGTCGGCTAAGA-TGAAGCAGAACAAGCTTGGTCTCC 450
Query 119 GTCGTGAGCAATGGCTTTCTCAAGTTGCGCTGATTAATAA 158
||||||||||||||||||||||||||||| ||| |||||
Sbjct 451 GTCGTGAGCAATGGCTTTCTCAAGTTGCGGTGAGCAATAA 490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5